Sequence ID | X_DroMel_CAF1 |
---|---|
Location | 9,441,589 – 9,441,683 |
Length | 94 |
Max. P | 0.538661 |
Location | 9,441,589 – 9,441,683 |
---|---|
Length | 94 |
Sequences | 5 |
Columns | 94 |
Reading direction | reverse |
Mean pairwise identity | 73.23 |
Mean single sequence MFE | -16.18 |
Consensus MFE | -6.44 |
Energy contribution | -6.04 |
Covariance contribution | -0.40 |
Combinations/Pair | 1.18 |
Mean z-score | -1.72 |
Structure conservation index | 0.40 |
SVM decision value | 0.01 |
SVM RNA-class probability | 0.538661 |
Prediction | RNA |
Download alignment: ClustalW | MAF
>X_DroMel_CAF1 9441589 94 - 22224390 AAAAAUUCGCGCAAAUUCCAAUGUCGAGUUUUGUUUGCUUUUAUUUCAUAUGACCGAUCAUAAAUAUGUUUAUUGUUUAUAAUCGUAAACAAAU .((((((((.(((........)))))))))))((((((.......((....))..(((.(((((((.......))))))).))))))))).... ( -17.50) >DroSec_CAF1 23327 94 - 1 GAAAAUUCGCGCAAAUUCCAUUGUCGAGUUUGGGUCGGUUUUAUUCCAUAUCAGCGAUCAUAAAUAUGUUUACUGUUUAUAAUCGUAAACAAAU .(((((..((.(((((((.......))))))).))..)))))...........(((((.(((((((.(....)))))))).)))))........ ( -19.60) >DroEre_CAF1 23495 73 - 1 ---------------------UGUCGACUUUUGGUCGGUUUUAUUUCAUAUUAUCGAUCAUAAAUGUGCUUAUUGUUUAUAAUCGUAAACAAAU ---------------------..........((((((((..(((...)))..))))))))............((((((((....)))))))).. ( -13.40) >DroYak_CAF1 24204 93 - 1 -AAAAUUCGCACAAAUUCCAUUGUCGAGUUUUGUGCGGUUUUAUUCCAUAUGACCGAUCAUAAAUAUGUUUAUUGUUUAUAAUCGUAAACAAAU -.(((..(((((((((((.......))).))))))))..)))......(((((....)))))..........((((((((....)))))))).. ( -18.80) >DroAna_CAF1 24221 71 - 1 -CAAAUUCGCACACAUUC----------------------UUUUUCUAUAUGGCCGGUCAUAAAUGUGUUUAUUGUUUAUAAUCGUAAACAAAU -.........(((((((.----------------------........(((((....))))))))))))...((((((((....)))))))).. ( -11.60) >consensus _AAAAUUCGCACAAAUUCCA_UGUCGAGUUUUGGUCGGUUUUAUUCCAUAUGACCGAUCAUAAAUAUGUUUAUUGUUUAUAAUCGUAAACAAAU ......................................................((((.(((((((.......))))))).))))......... ( -6.44 = -6.04 + -0.40)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 11:01:34 2006