Sequence ID | X_DroMel_CAF1 |
---|---|
Location | 9,441,277 – 9,441,393 |
Length | 116 |
Max. P | 0.622791 |
Location | 9,441,277 – 9,441,393 |
---|---|
Length | 116 |
Sequences | 5 |
Columns | 120 |
Reading direction | forward |
Mean pairwise identity | 89.37 |
Mean single sequence MFE | -25.72 |
Consensus MFE | -18.70 |
Energy contribution | -20.42 |
Covariance contribution | 1.72 |
Combinations/Pair | 1.10 |
Mean z-score | -1.81 |
Structure conservation index | 0.73 |
SVM decision value | 0.18 |
SVM RNA-class probability | 0.622791 |
Prediction | RNA |
Download alignment: ClustalW | MAF
>X_DroMel_CAF1 9441277 116 + 22224390 AAACA----AACAAAACGAAUGCAAUUCGAUCUCGAACUGGAUCUUGUUGUCUUCCGCUAUUCAAUUGCCGUAAAACGCAAUUCAAAUGCGAUUGCAUAAGAAUCAGAUGGAAAUCGAGA .....----................((((((.((.(.((((.((((((.((..((.((.....((((((........)))))).....))))..)))))))).)))).).)).)))))). ( -26.90) >DroSec_CAF1 22996 116 + 1 AAACA----AACAAAACGAAUGCAAUUCGAUCUCGAACUGGAUCUUGUUGUCUUCCGCUAUUCAAUUGCCGUAAAACGCAAUUCAAAUGCGAUUGCAUAAGAAUCAAAUGGAAAUCGAGA .....----................((((((.((.(..(((.((((((.((..((.((.....((((((........)))))).....))))..)))))))).)))..).)).)))))). ( -23.30) >DroEre_CAF1 23132 120 + 1 AAACAAACAAACAAAACGAAUGCAAUUCGAUCUCGAACUGGAUCUUGUUGUCUUCCGCUAUUCAAUUGCCGUAAAACGCAAUUCAAAUGGGAUUGCAUAAGAAUCGGAUGGAAAUCGAGA .........................((((((.((.(.((((.((((((.((..(((.(.....((((((........)))))).....))))..)))))))).)))).).)).)))))). ( -27.00) >DroYak_CAF1 23849 116 + 1 AAACA----AACAAAACGAAUGCAAUUCGAUCUCGAACUGGAUCUUGUUGUCUUCCGCUAUUCAAUUGCCGUAAAACGCAAUUCAAAUGCGAUUGCAUAAGAAUCGGAUGGAAAUCGAGA .....----................((((((.((.(.((((.((((((.((..((.((.....((((((........)))))).....))))..)))))))).)))).).)).)))))). ( -26.20) >DroAna_CAF1 23874 105 + 1 ACAGA----AACAA----AAUGCAAUUCGAUCUCGAACUGGAUCUCGUUGUCUUCCGCUUUUCAAUUGCCGUAAAACGCAAUUUCGAACGGGUUGCAUAAGAUCC-------AAUCCAGA .....----.....----.......((((....)))).(((((((...(((..((((.(((..((((((........))))))..)))))))..)))..))))))-------)....... ( -25.20) >consensus AAACA____AACAAAACGAAUGCAAUUCGAUCUCGAACUGGAUCUUGUUGUCUUCCGCUAUUCAAUUGCCGUAAAACGCAAUUCAAAUGCGAUUGCAUAAGAAUCAGAUGGAAAUCGAGA .........................((((((.((.(.((((.((((((.((..((.((.....((((((........)))))).....))))..)))))))).)))).).)).)))))). (-18.70 = -20.42 + 1.72)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 11:01:33 2006