Sequence ID | X_DroMel_CAF1 |
---|---|
Location | 9,439,514 – 9,439,621 |
Length | 107 |
Max. P | 0.521751 |
Location | 9,439,514 – 9,439,621 |
---|---|
Length | 107 |
Sequences | 3 |
Columns | 107 |
Reading direction | forward |
Mean pairwise identity | 85.36 |
Mean single sequence MFE | -34.70 |
Consensus MFE | -25.11 |
Energy contribution | -24.45 |
Covariance contribution | -0.66 |
Combinations/Pair | 1.13 |
Mean z-score | -1.82 |
Structure conservation index | 0.72 |
SVM decision value | -0.02 |
SVM RNA-class probability | 0.521751 |
Prediction | RNA |
Download alignment: ClustalW | MAF
>X_DroMel_CAF1 9439514 107 + 22224390 AUUAGAACAGCUGACCGCAUCCGGAUUUCAAGGGUCCACGAAGCGGCGGUCAAGUCUAUGGAAAAAGAAACGUCGUAGUGGCCAAGGCCAAAACCGGUACAGUUGCC .......((((((((((.....(((((.....))))).....((((((......(((.(....).)))..))))))..((((....))))....)))).)))))).. ( -32.80) >DroSec_CAF1 21096 107 + 1 AUGAGAACAGCUGACCGCAUCCGGAUUUCAAGGGCCCCCGAAGCGGCGCUCAAGUCUAUGGAAAAAGAAUCGUUGUAGUGGCCAAGGCCAAAACCGGUACAGUUGCC .......((((((((((..(((((((((..((.(((........))).)).))))))..))).........(((....((((....)))).))))))).)))))).. ( -33.20) >DroYak_CAF1 22024 101 + 1 AUUAGAACAGCUGACCGCAUCCGGAUUUCAAGGGCUCU----ACGGCGGUCAAGAAUACAG--AAUGUAACGUCGUAGUGGCCAAGGUCAGAAGCGGUACAGUUGCC .......(((((((((((.((..(((((....((((((----((((((..((.........--..))...)))))))).)))).))))).)).))))).)))))).. ( -38.10) >consensus AUUAGAACAGCUGACCGCAUCCGGAUUUCAAGGGCCCACGAAGCGGCGGUCAAGUCUAUGGAAAAAGAAACGUCGUAGUGGCCAAGGCCAAAACCGGUACAGUUGCC .......((((((((((..(((.........)))........((((((......................))))))..((((....))))....)))).)))))).. (-25.11 = -24.45 + -0.66)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 11:01:31 2006