Sequence ID | X_DroMel_CAF1 |
---|---|
Location | 1,085,422 – 1,085,527 |
Length | 105 |
Max. P | 0.586185 |
Location | 1,085,422 – 1,085,527 |
---|---|
Length | 105 |
Sequences | 5 |
Columns | 106 |
Reading direction | reverse |
Mean pairwise identity | 82.56 |
Mean single sequence MFE | -22.50 |
Consensus MFE | -16.40 |
Energy contribution | -17.04 |
Covariance contribution | 0.64 |
Combinations/Pair | 1.19 |
Mean z-score | -1.60 |
Structure conservation index | 0.73 |
SVM decision value | 0.11 |
SVM RNA-class probability | 0.586185 |
Prediction | RNA |
Download alignment: ClustalW | MAF
>X_DroMel_CAF1 1085422 105 - 22224390 UACUCGAGAUAUAUGUAGAUACCAUACAG-CCAUGCCAUCAUGGUAUCAUAGCUUCUGAAUCAUAUCCUUAGGUGAUUCAUUCUUGGAAACCAUGGUUUGUUAUCA ...((((((........((((((((...(-(...))....))))))))........((((((((........)))))))).))))))((((....))))....... ( -24.00) >DroSec_CAF1 7076 101 - 1 UACUCGAGAUAU----GGAUACCGUACAG-CCAUGCCAUCAUGGUAUCAUAGCUUCUGAAUCAUAUCCUUAAGUGGUUCAUUCUUGGAAACCAUGGUUUGUUAUCG ...((((((...----.((((((((...(-(...))....))))))))........((((((((........)))))))).))))))((((....))))....... ( -22.70) >DroSim_CAF1 5647 101 - 1 UACUCGAGAUAU----GGAUACCAUACAG-CCAUGUCAUCAUGGUAUCAUAGCUUCUGAAUCAUAUCCUUAGGUGAUUCAUUCUUGGAAACCAUGGUUUGUUAUCG ....((((((((----((...........-)))))))((((((((.((........((((((((........))))))))......)).))))))))......))) ( -27.04) >DroEre_CAF1 9702 102 - 1 UACUUGAGAUAU-UGUGGUUACCAUACAGACCAUACC---UUUGUAUCAUAACUUCUGAAUCAUAUCCUUGGGUGAUUCAUUCUCGGAAACCUUGGCUUGUUAUCU .....((((...-.(.(((((..(((((((.......---)))))))..))))).)((((((((........)))))))).))))(....)............... ( -19.80) >DroYak_CAF1 6253 89 - 1 UACUUGAGAUA----UGGUUACCAAACA-------------UUGUAUCACAACUUCUGAAUCAUAUCCUUAGGUGAUUCAUUAUCGGGAACCUUGGUUUCUUAUCA (((((((((((----(((((........-------------(((.....)))......)))))))).))))))))..........((((((....))))))..... ( -18.94) >consensus UACUCGAGAUAU___UGGAUACCAUACAG_CCAUGCCAUCAUGGUAUCAUAGCUUCUGAAUCAUAUCCUUAGGUGAUUCAUUCUUGGAAACCAUGGUUUGUUAUCA ...((((((........((((((((...............))))))))........((((((((........)))))))).))))))((((....))))....... (-16.40 = -17.04 + 0.64)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 09:42:24 2006