Sequence ID | X_DroMel_CAF1 |
---|---|
Location | 9,437,474 – 9,437,565 |
Length | 91 |
Max. P | 0.931826 |
Location | 9,437,474 – 9,437,565 |
---|---|
Length | 91 |
Sequences | 5 |
Columns | 119 |
Reading direction | forward |
Mean pairwise identity | 83.17 |
Mean single sequence MFE | -21.20 |
Consensus MFE | -15.39 |
Energy contribution | -15.39 |
Covariance contribution | -0.00 |
Combinations/Pair | 1.17 |
Mean z-score | -2.27 |
Structure conservation index | 0.73 |
SVM decision value | 1.22 |
SVM RNA-class probability | 0.931826 |
Prediction | RNA |
Download alignment: ClustalW | MAF
>X_DroMel_CAF1 9437474 91 + 22224390 ---------------UGUUGUUAUGCAAAUGCUAA-------------AAAGCAUUUCAAACGACAGCAAAAUGCAAUUUUCGAAAGUGUGAAAUGGAAAUGCAAAAGCGAAUGGCGAA ---------------(((((((.((.(((((((..-------------..))))))))))))))))......(((....((((....(((...((....)))))....))))..))).. ( -20.80) >DroSec_CAF1 18991 91 + 1 ---------------UGUUGUUAUGCAAAUGCUAA-------------AAAGCAUUUCAAACGACAGCAAAAUGCAAUUUUCGAAAGUGUGAAAUGGAAAUGCAAAAGCGAAUGGCGAA ---------------(((((((.((.(((((((..-------------..))))))))))))))))......(((....((((....(((...((....)))))....))))..))).. ( -20.80) >DroEre_CAF1 19398 91 + 1 ---------------UGUUGUUAUGCAAAUGCUAA-------------AAAGCAUUACAAACGACAGCAAAAUGCAAUUUUCGAAAGUGUGAAAUGGAAAUGCAAAAGCGAAUGGCGAA ---------------((((((..(...((((((..-------------..))))))....)..))))))...(((....((((....(((...((....)))))....))))..))).. ( -18.80) >DroYak_CAF1 19972 106 + 1 UUUUUUGUUUUGUAUUGUUGUUAUGCAAAUGCUAA-------------AAAGCAUUUCAAACGACAGCAAAAUGCAAUUUUCGAAAGUGUGAAAUGGAAAUGCAAAAGCGAAUGGCGAA ......(((((((..(((((((.((.(((((((..-------------..)))))))))))))))))))))))((....((((....(((...((....)))))....))))..))... ( -25.50) >DroAna_CAF1 16559 104 + 1 ---------------UGUUGUUACGCAAAUGGUAAAUUGCAAACCGCAAAGGCAUUUCAAGCGACGGCAAAAUGCGAUUUUCGAAAGUGUGAAAUGGAAAUGCAACGAGGAAACACAAA ---------------.((((((((((...(((.((((((((....((....)).......((....))....)))))))))))...)))))..((....)))))))..(....)..... ( -20.10) >consensus _______________UGUUGUUAUGCAAAUGCUAA_____________AAAGCAUUUCAAACGACAGCAAAAUGCAAUUUUCGAAAGUGUGAAAUGGAAAUGCAAAAGCGAAUGGCGAA ...............((((((..(..(((((((.................)))))))...)..))))))...(((....((((....(((...........)))....))))..))).. (-15.39 = -15.39 + -0.00)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 11:01:28 2006