Sequence ID | X_DroMel_CAF1 |
---|---|
Location | 9,430,019 – 9,430,128 |
Length | 109 |
Max. P | 0.942388 |
Location | 9,430,019 – 9,430,128 |
---|---|
Length | 109 |
Sequences | 5 |
Columns | 112 |
Reading direction | forward |
Mean pairwise identity | 81.57 |
Mean single sequence MFE | -23.10 |
Consensus MFE | -15.62 |
Energy contribution | -16.14 |
Covariance contribution | 0.52 |
Combinations/Pair | 1.17 |
Mean z-score | -2.33 |
Structure conservation index | 0.68 |
SVM decision value | 1.33 |
SVM RNA-class probability | 0.942388 |
Prediction | RNA |
Download alignment: ClustalW | MAF
>X_DroMel_CAF1 9430019 109 + 22224390 CCAAUACGCAGGCAGCAACGAAAAAUCCUAUUGGCUACUUUUAAAUGCGCUACCGACAUUAAAUGGAUAUAAA--UACAUGUGUCUCUAUCAAAUAAAAA-AAUUUUGCGUA ....(((((((((.(((...((((..((....))....))))...))))))...(((((...(((........--..))))))))...............-.....)))))) ( -18.10) >DroSec_CAF1 11775 106 + 1 CCAAUACGCAGGCAGCAAAU-AAAAUCCGAUUGGCGACUUUCAAAUGCGCUACCAUCAUUAAAUGGAUAUAAA--UACAUUUGUCUCUAUCAAAUAA--A-AGUGUUGCCUA .........((((((((...-.......((((((((.(........))))))..)))(((..(((((.(((((--....))))).)))))..)))..--.-..)))))))). ( -23.10) >DroSim_CAF1 12488 108 + 1 CCAAUACGCAGGCAGCAAAU-AAAAUCCGAUUGGCGACUUUCAAAUGCGCUACCAUCAUUAAAUGGAUAUAAA--UACAUUUAUCUCUAUCAAAUAAAAA-AGUGUUGCCUA .........((((((((...-.......((((((((.(........))))))..)))(((..(((((.(((((--....))))).)))))..))).....-..)))))))). ( -23.10) >DroEre_CAF1 11923 112 + 1 CCAACACGCAGGCAGCAACGAAAAGUCCGAUUGGCGACUUUUAGAUGCGCUACCAUCGUUAAAUGGUUAUAAAAGAAAACAUGCCUCUAAUAAAUAAAUUAAUUGUUGCCUA .........(((((((((..((((((((.....).)))))))(((.(((..(((((......)))))..............))).)))..............))))))))). ( -24.09) >DroYak_CAF1 12411 109 + 1 CCAACACGCAGGCAGCAACGAAAAAUCCAAUUGGCGACUAUUAAGUGCGCUAUCAUCAUUAAAUGGUUAUA---GCAAAUAUUUCUCUGAUAAAAAUAGAAAUGGCUGCCUA .........(((((((.................((.(((....)))))(((((.(((((...))))).)))---))...(((((((.(.......).)))))))))))))). ( -27.10) >consensus CCAAUACGCAGGCAGCAACGAAAAAUCCGAUUGGCGACUUUUAAAUGCGCUACCAUCAUUAAAUGGAUAUAAA__UACAUAUGUCUCUAUCAAAUAAAAA_AGUGUUGCCUA .........((((((((..............(((((.(........))))))((((......)))).....................................)))))))). (-15.62 = -16.14 + 0.52)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 11:01:19 2006