Sequence ID | X_DroMel_CAF1 |
---|---|
Location | 9,428,880 – 9,428,972 |
Length | 92 |
Max. P | 0.988599 |
Location | 9,428,880 – 9,428,972 |
---|---|
Length | 92 |
Sequences | 3 |
Columns | 92 |
Reading direction | forward |
Mean pairwise identity | 85.66 |
Mean single sequence MFE | -24.17 |
Consensus MFE | -23.02 |
Energy contribution | -23.13 |
Covariance contribution | 0.11 |
Combinations/Pair | 1.05 |
Mean z-score | -1.90 |
Structure conservation index | 0.95 |
SVM decision value | 1.64 |
SVM RNA-class probability | 0.969467 |
Prediction | RNA |
Download alignment: ClustalW | MAF
>X_DroMel_CAF1 9428880 92 + 22224390 AAGUGAAAGAAGAAGAGUGAAGAGUGGAGAGAGCGUGAGGCGGAGGGAGUUGUAGUUGGAGCUGCUUUAAGCUAGACGUCAUCGCACUCUCG ............................(((((.((((((((...((..(.(((((....)))))...)..))...)))).)))).))))). ( -25.50) >DroSec_CAF1 10632 81 + 1 -------AG----AUGGUGAAGGGUUGAGAGAGCGUGAGGCGGAGGGAGUUGUAUUUGUAGCUGCUUUAAGCUAAACGUCAUCGCACUCUCG -------..----...............(((((.((((((((((((.(((((......))))).))))........)))).)))).))))). ( -23.30) >DroSim_CAF1 11403 81 + 1 -------AG----AUGGUGAAGGGUUGAGAGAGCGUGAGGCGGAGGGAGUUGUAGUUGUAGCUGCUUUAAGCUAAACGUCAUCGCACUCUUG -------..----......((((((.(.((..((((..(((.((((.(((((......))))).))))..)))..))))..)).))))))). ( -23.70) >consensus _______AG____AUGGUGAAGGGUUGAGAGAGCGUGAGGCGGAGGGAGUUGUAGUUGUAGCUGCUUUAAGCUAAACGUCAUCGCACUCUCG ............................(((((.((((((((...((..(.(((((....)))))...)..))...)))).)))).))))). (-23.02 = -23.13 + 0.11)
Location | 9,428,880 – 9,428,972 |
---|---|
Length | 92 |
Sequences | 3 |
Columns | 92 |
Reading direction | reverse |
Mean pairwise identity | 85.66 |
Mean single sequence MFE | -15.31 |
Consensus MFE | -14.37 |
Energy contribution | -15.04 |
Covariance contribution | 0.67 |
Combinations/Pair | 1.00 |
Mean z-score | -2.53 |
Structure conservation index | 0.94 |
SVM decision value | 2.13 |
SVM RNA-class probability | 0.988599 |
Prediction | RNA |
Download alignment: ClustalW | MAF
>X_DroMel_CAF1 9428880 92 - 22224390 CGAGAGUGCGAUGACGUCUAGCUUAAAGCAGCUCCAACUACAACUCCCUCCGCCUCACGCUCUCUCCACUCUUCACUCUUCUUCUUUCACUU .(((((.(((.(((.((...((.....))((......))............)).)))))).))))).......................... ( -15.50) >DroSec_CAF1 10632 81 - 1 CGAGAGUGCGAUGACGUUUAGCUUAAAGCAGCUACAAAUACAACUCCCUCCGCCUCACGCUCUCUCAACCCUUCACCAU----CU------- .(((((.(((.(((.((.(((((......))))).................)).)))))).))))).............----..------- ( -17.47) >DroSim_CAF1 11403 81 - 1 CAAGAGUGCGAUGACGUUUAGCUUAAAGCAGCUACAACUACAACUCCCUCCGCCUCACGCUCUCUCAACCCUUCACCAU----CU------- ..((((.(((.(((.((.(((((......))))).................)).)))))).))))..............----..------- ( -12.97) >consensus CGAGAGUGCGAUGACGUUUAGCUUAAAGCAGCUACAACUACAACUCCCUCCGCCUCACGCUCUCUCAACCCUUCACCAU____CU_______ .(((((.(((.(((.((.(((((......))))).................)).)))))).))))).......................... (-14.37 = -15.04 + 0.67)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 11:01:15 2006