Sequence ID | X_DroMel_CAF1 |
---|---|
Location | 9,425,995 – 9,426,086 |
Length | 91 |
Max. P | 0.500000 |
Location | 9,425,995 – 9,426,086 |
---|---|
Length | 91 |
Sequences | 4 |
Columns | 95 |
Reading direction | forward |
Mean pairwise identity | 83.51 |
Mean single sequence MFE | -25.27 |
Consensus MFE | -15.16 |
Energy contribution | -16.23 |
Covariance contribution | 1.06 |
Combinations/Pair | 1.12 |
Mean z-score | -1.81 |
Structure conservation index | 0.60 |
SVM decision value | -0.07 |
SVM RNA-class probability | 0.500000 |
Prediction | OTHER |
Download alignment: ClustalW | MAF
>X_DroMel_CAF1 9425995 91 + 22224390 CUCCAUUCUGCACGAAAGCGAAAGGAGUUCCUGAUUAGGGGGAUUCAUACACAUGGCAGUGGUAUCUACAUAC----GUACUUAUGGUGGAACUA .((((((((((.(....)(....)((((((((......)))))))).........)))).(((((........----)))))...)))))).... ( -22.40) >DroSec_CAF1 7800 95 + 1 CUCCAUUCUGCACGAAAGCGAAAGGAGUUCCUGAUUAGGGGGAUUCAUACACACGGCAGUAGUAUGUACAUACAUAUGUACUUAUGGUGGAACUA .((((((((((.((....(....)((((((((......)))))))).......))))))..(((.((((((....)))))).))))))))).... ( -28.70) >DroSim_CAF1 8055 95 + 1 CUCCAUUCUGCACGAAAGCGAAAGGAGUUCCUGAUCAGGGGAAUUCAUACACACGGCAGUAGUAUGUACAUACAUAUGUACUUAUGGUGGAACUA .((((((((((.((....(....)((((((((......)))))))).......))))))..(((.((((((....)))))).))))))))).... ( -29.20) >DroYak_CAF1 8361 82 + 1 CUCCAUUCUGCACGAAAGCGAAAGGAGUUCCUGAUUAGGGGAAUGCACACAUA-----------UGUACUUUAGUAUCU--UUAUGGUGUUACUA ((((.(((.((......))))).))))(((((.....)))))..((((.((((-----------.((((....))))..--.))))))))..... ( -20.80) >consensus CUCCAUUCUGCACGAAAGCGAAAGGAGUUCCUGAUUAGGGGAAUUCAUACACACGGCAGUAGUAUGUACAUACAUAUGUACUUAUGGUGGAACUA ((((.(((.((......))))).))))(((((......)))))......(((........((((((((......))))))))....)))...... (-15.16 = -16.23 + 1.06)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 11:01:13 2006