Sequence ID | X_DroMel_CAF1 |
---|---|
Location | 9,420,749 – 9,420,869 |
Length | 120 |
Max. P | 0.953068 |
Location | 9,420,749 – 9,420,869 |
---|---|
Length | 120 |
Sequences | 5 |
Columns | 120 |
Reading direction | forward |
Mean pairwise identity | 94.08 |
Mean single sequence MFE | -41.64 |
Consensus MFE | -39.18 |
Energy contribution | -39.18 |
Covariance contribution | -0.00 |
Combinations/Pair | 1.06 |
Mean z-score | -1.43 |
Structure conservation index | 0.94 |
SVM decision value | 1.43 |
SVM RNA-class probability | 0.953068 |
Prediction | RNA |
Download alignment: ClustalW | MAF
>X_DroMel_CAF1 9420749 120 + 22224390 GAUUGGCCACAUCGGCGAAUGCCUGCGAGUCCAGUUGCUCCCUGAUGCUCUCGAUGUCCCGCAGCACAUACUUGCAGUAGGCACUCAUAAAAAUGGCCGAUGCGCCGCCGAUCCCGGCUA ....(((..(((((((...(((((((((((.(((.......)))..))))..........((((.......)))).)))))))..(((....)))))))))).)))((((....)))).. ( -43.20) >DroSec_CAF1 2501 120 + 1 GAUUGGCCACAUCGGCAAAUGCCUGCGAGUCCAGUUGCUCCCUGAUGCUUUCGAUGUCCCGCAGCACAUACUUGCAGUAGGCACUCAUAAAGAUGGCCGAUGCGCCGCCGAUCCCGGCUA ....(((..(((((((...(((((((((((......)))).....(((.....((((........))))....))))))))))..(((....)))))))))).)))((((....)))).. ( -43.00) >DroSim_CAF1 2486 120 + 1 GAUUGGCCACAUCGGCAAACGCCUGCGAGUCCAGUUGCUCCCUGAUGCUUUCGAUGUCCCGCAGCACAUACUUGCAGUAGGCACUCAUAAAGAUGGCCGAUGCGCCGCCGAUCCCGGCUA ....(((..(((((((....((((((((((......)))).....(((.....((((........))))....)))))))))...(((....)))))))))).)))((((....)))).. ( -42.60) >DroEre_CAF1 2550 120 + 1 GAUUGGCCACGUCGGCGAACGCCUGCGAGUCCAACUGCUCCCUGAUGCUAUCGAUGUCCCGCAGCACAUACUUGCAAUAGGCACUCAUGAAGAUGGCCGAUGCGCCGCCAAUCCCAGCCA ((((((((.(((((((....((((((((((....((((.....(((.........)))..)))).....))))))...))))...(((....)))))))))).)..)))))))....... ( -38.60) >DroYak_CAF1 2530 120 + 1 GAUUGGCCACAUCGGCGAAUGCCUGCGAGUCCAGUUGCUCCCUGAUGCCAUCGAUGUCCCGCAGCACAUACUUGCAGUAGGCACUCAUAAAGAUAGCCGAUGCGCCGCCAAUCCCCGCCA ((((((((.(((((((((.(((((((((((......)))).....(((.....((((........))))....)))))))))).))((....)).))))))).)..)))))))....... ( -40.80) >consensus GAUUGGCCACAUCGGCGAAUGCCUGCGAGUCCAGUUGCUCCCUGAUGCUAUCGAUGUCCCGCAGCACAUACUUGCAGUAGGCACUCAUAAAGAUGGCCGAUGCGCCGCCGAUCCCGGCUA ((((((((.(((((((....((((((((((......)))).....(((.....((((........))))....)))))))))...(((....)))))))))).)..)))))))....... (-39.18 = -39.18 + -0.00)
Location | 9,420,749 – 9,420,869 |
---|---|
Length | 120 |
Sequences | 5 |
Columns | 120 |
Reading direction | reverse |
Mean pairwise identity | 94.08 |
Mean single sequence MFE | -46.96 |
Consensus MFE | -42.34 |
Energy contribution | -41.74 |
Covariance contribution | -0.60 |
Combinations/Pair | 1.14 |
Mean z-score | -1.12 |
Structure conservation index | 0.90 |
SVM decision value | 0.00 |
SVM RNA-class probability | 0.534495 |
Prediction | RNA |
Download alignment: ClustalW | MAF
>X_DroMel_CAF1 9420749 120 - 22224390 UAGCCGGGAUCGGCGGCGCAUCGGCCAUUUUUAUGAGUGCCUACUGCAAGUAUGUGCUGCGGGACAUCGAGAGCAUCAGGGAGCAACUGGACUCGCAGGCAUUCGCCGAUGUGGCCAAUC ..((((....))))(((((((((((.........((((((((.(((((.((....)))))))......(.(((..((((.......)))).))).))))))))))))))))).))).... ( -48.90) >DroSec_CAF1 2501 120 - 1 UAGCCGGGAUCGGCGGCGCAUCGGCCAUCUUUAUGAGUGCCUACUGCAAGUAUGUGCUGCGGGACAUCGAAAGCAUCAGGGAGCAACUGGACUCGCAGGCAUUUGCCGAUGUGGCCAAUC ..((((....))))(((((((((((.........((((((((...(((......))).(((((....(....)..((((.......)))).))))))))))))))))))))).))).... ( -47.50) >DroSim_CAF1 2486 120 - 1 UAGCCGGGAUCGGCGGCGCAUCGGCCAUCUUUAUGAGUGCCUACUGCAAGUAUGUGCUGCGGGACAUCGAAAGCAUCAGGGAGCAACUGGACUCGCAGGCGUUUGCCGAUGUGGCCAAUC ..((((....))))(((((((((((......((((..(((.....)))..))))..(((((((....(....)..((((.......)))).)))))))......)))))))).))).... ( -45.10) >DroEre_CAF1 2550 120 - 1 UGGCUGGGAUUGGCGGCGCAUCGGCCAUCUUCAUGAGUGCCUAUUGCAAGUAUGUGCUGCGGGACAUCGAUAGCAUCAGGGAGCAGUUGGACUCGCAGGCGUUCGCCGACGUGGCCAAUC ((((((.(.((((((((((............((((..(((.....)))..))))..(((((((...(((((.((........)).))))).)))))))))).)))))))).))))))... ( -46.00) >DroYak_CAF1 2530 120 - 1 UGGCGGGGAUUGGCGGCGCAUCGGCUAUCUUUAUGAGUGCCUACUGCAAGUAUGUGCUGCGGGACAUCGAUGGCAUCAGGGAGCAACUGGACUCGCAGGCAUUCGCCGAUGUGGCCAAUC .......(((((((..(((((((((((....)).((((((((...((.(((..(((((((((....))).))))))(((.......))).))).)))))))))))))))))))))))))) ( -47.30) >consensus UAGCCGGGAUCGGCGGCGCAUCGGCCAUCUUUAUGAGUGCCUACUGCAAGUAUGUGCUGCGGGACAUCGAAAGCAUCAGGGAGCAACUGGACUCGCAGGCAUUCGCCGAUGUGGCCAAUC ..((((....))))(((((((((((.........((((((((...(((......))).(((((....(....)..((((.......)))).))))))))))))))))))))).))).... (-42.34 = -41.74 + -0.60)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 11:01:09 2006