Sequence ID | X_DroMel_CAF1 |
---|---|
Location | 9,401,036 – 9,401,156 |
Length | 120 |
Max. P | 0.819041 |
Location | 9,401,036 – 9,401,156 |
---|---|
Length | 120 |
Sequences | 5 |
Columns | 120 |
Reading direction | forward |
Mean pairwise identity | 92.42 |
Mean single sequence MFE | -41.42 |
Consensus MFE | -33.48 |
Energy contribution | -33.28 |
Covariance contribution | -0.20 |
Combinations/Pair | 1.15 |
Mean z-score | -1.66 |
Structure conservation index | 0.81 |
SVM decision value | 0.67 |
SVM RNA-class probability | 0.819041 |
Prediction | RNA |
Download alignment: ClustalW | MAF
>X_DroMel_CAF1 9401036 120 + 22224390 AUUUUGGCCAAUCCAAGGGUAAUGCGUGCUUCUGCAGGUUCCGGCAGUUGGAGAUCGGAUUUGAAGGACUCCAACGAGGAUUCGGGUGCGGAAAACUUGGGUUGCAGCUGACUAAGAUGA ...(..(((((((((((..(..(((((((....)))(..(((....(((((((.((.........)).)))))))..)))..)...))))..)..)))))))))..))..)......... ( -38.40) >DroSec_CAF1 1002 120 + 1 AUUUUGGCUAAUCCAAGGGUAAUGCGUGCUUCUGCAGGUUCCGACAGGUGGAGAUCGGAUUUGAAGGCCUCCAAAGAGGAUUCGGGUGCGGGAAACUUGGGUUGCAGCUGACUAAGACGA ...(..(((((((((((((....((.(((....))).)).))............(((.(((((((..((((....)))).))))))).)))....))))))))..)))..)......... ( -37.20) >DroSim_CAF1 454 120 + 1 AUUUUGGCUAAUCCAAGGGUAAUGCGUGCUUCUGCAGGUUCCGACAGGUGGAGAUCGGAUUUGAAGGCCUCCAAAGAGGAUUCGGGUGCGGAAAACUUGGGUUGCAGCUGACUAAGAUGA ...(..(((((((((((((....((.(((....))).)).))............(((.(((((((..((((....)))).))))))).)))....))))))))..)))..)......... ( -37.20) >DroEre_CAF1 1005 120 + 1 AUUUUGGCCAAUCCGAGGGUAAUACGUGCUUCUGCUGGUUCCGGCAGGUGGAGGUCGGAUUUGAAGGCCUCCAAAGAGGAUUCGGGUGCUGCAAACUUGGGUUGCAGUUGGCUAAGAUGA (((((((((((((((((.............(((((((....)))))))((((((((.........)))))))).......)))))))(((((((.(....)))))))))))))))))).. ( -51.20) >DroYak_CAF1 696 120 + 1 AUUUUGGCCAAUCCGAGGGUAAUACGUGCUUCUGCAGGCUCCGGCAGGUAAAGGUCGGAUUUGAAGGCCUCCAAAGAGGAUUCGGGUGCGGAGAACUUGGGUUGCAGCUGGCUAAGAUGU (((((((((((((((((((((.....))))((((((...((((((........))))))((((((..((((....)))).))))))))))))...)))))))......)))))))))).. ( -43.10) >consensus AUUUUGGCCAAUCCAAGGGUAAUGCGUGCUUCUGCAGGUUCCGGCAGGUGGAGAUCGGAUUUGAAGGCCUCCAAAGAGGAUUCGGGUGCGGAAAACUUGGGUUGCAGCUGACUAAGAUGA ...(..(((((((((((((....((.(((....))).)).))............(((.(((((((..((((....)))).))))))).)))....)))))))))..))..)......... (-33.48 = -33.28 + -0.20)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 11:01:02 2006