Sequence ID | X_DroMel_CAF1 |
---|---|
Location | 9,396,098 – 9,396,257 |
Length | 159 |
Max. P | 0.582094 |
Location | 9,396,098 – 9,396,217 |
---|---|
Length | 119 |
Sequences | 4 |
Columns | 120 |
Reading direction | reverse |
Mean pairwise identity | 85.22 |
Mean single sequence MFE | -34.76 |
Consensus MFE | -28.06 |
Energy contribution | -30.62 |
Covariance contribution | 2.56 |
Combinations/Pair | 1.19 |
Mean z-score | -1.48 |
Structure conservation index | 0.81 |
SVM decision value | 0.10 |
SVM RNA-class probability | 0.582094 |
Prediction | RNA |
Download alignment: ClustalW | MAF
>X_DroMel_CAF1 9396098 119 - 22224390 UAGUUUUCUUGAAAUUGCAUCGGCUAAGCUUUCAGUUGAGCAGAGCUUUCAGCGCUGUUAAGAUGUACCCACUC-CACAGUGCUCGUUAGCAUCGCUGUUAAGGACACGGCAACUUGUUG ..((.(((((((....((.((.(((.(((.....))).))).))(((..(((((((((..((.((....)))).-.)))))))).)..)))...))..))))))).))(....)...... ( -32.70) >DroSec_CAF1 10048 119 - 1 AUGUUUCUUUGAAAUUGCAUCGGCUAAGCUUUCGGUUUAGCAGAGCUUGCAGCGCUGUUAAGGUGCACCCACUC-CACAGUGCCCGUUAGCAGAGCUGUUAAGGACACGACAACUUGUUG .(((.((((((.....((.((.(((((((.....))))))).))))..(((((.(((((((((.((((......-....)))))).))))))).))))))))))).)))........... ( -40.10) >DroSim_CAF1 14214 119 - 1 AAGUUUCUUUGAAAUUGCAUCGGCUAAGCUUUCAGUUUAGCAGAGCUUGCAGCGCUGUUAAGGUGCUCCCACUC-CACAGUGUCCGUUUGCAGCGCUGUUAAGGACACGGCAACUUGUUG ..((.((((((.....((.((.(((((((.....))))))).))))..((((((((((...((......((((.-...)))).))....)))))))))))))))).))(....)...... ( -38.90) >DroYak_CAF1 14033 119 - 1 AAGUUAACAUAAAACUGCAUCGGCUAAACUUAAAUUUUAGCAGAGCUUUCACCGCUGUUAAAAUUCGCCCACUCCCACAG-ACCCGUUAGCAGCGCUGUUAAGCCCAUGGCAACUUGUUG (((((..(((.........((.((((((.......)))))).))((((.((.(((((((((...((.............)-)....))))))))).))..))))..)))..))))).... ( -27.32) >consensus AAGUUUCCUUGAAAUUGCAUCGGCUAAGCUUUCAGUUUAGCAGAGCUUGCAGCGCUGUUAAGAUGCACCCACUC_CACAGUGCCCGUUAGCAGCGCUGUUAAGGACACGGCAACUUGUUG ..((.(((((((....((.((.(((((((.....))))))).))))...((((((((((((.(.((((...........)))).).))))))))))))))))))).))............ (-28.06 = -30.62 + 2.56)
Location | 9,396,138 – 9,396,257 |
---|---|
Length | 119 |
Sequences | 4 |
Columns | 120 |
Reading direction | reverse |
Mean pairwise identity | 85.36 |
Mean single sequence MFE | -33.73 |
Consensus MFE | -24.42 |
Energy contribution | -24.67 |
Covariance contribution | 0.25 |
Combinations/Pair | 1.15 |
Mean z-score | -1.52 |
Structure conservation index | 0.72 |
SVM decision value | 0.09 |
SVM RNA-class probability | 0.580389 |
Prediction | RNA |
Download alignment: ClustalW | MAF
>X_DroMel_CAF1 9396138 119 - 22224390 AUAAACUUGCUCUGCGGCGCCAUCUGUUGGCGACGACUAGUAGUUUUCUUGAAAUUGCAUCGGCUAAGCUUUCAGUUGAGCAGAGCUUUCAGCGCUGUUAAGAUGUACCCACUC-CACAG ........(((((((..(((((.....))))).(((((...(((((..((((.......))))..)))))...))))).)))))))........((((..((.((....)))).-.)))) ( -33.40) >DroSec_CAF1 10088 119 - 1 AUAAACUUGCUCUGCACCGCCAUCUGUUGGCGACCACUCGAUGUUUCUUUGAAAUUGCAUCGGCUAAGCUUUCGGUUUAGCAGAGCUUGCAGCGCUGUUAAGGUGCACCCACUC-CACAG .....(..(((((((..(((((.....)))))(((...((((((............))))))((...))....)))...)))))))..)..(((((.....)))))........-..... ( -36.50) >DroSim_CAF1 14254 119 - 1 AUAAACUUGCUCUGCACCGCCAUCUGUUGGCGACCACUCGAAGUUUCUUUGAAAUUGCAUCGGCUAAGCUUUCAGUUUAGCAGAGCUUGCAGCGCUGUUAAGGUGCUCCCACUC-CACAG .....(..(((((((..(((((.....)))))...(((.(((((((..((((.......))))..))))))).)))...)))))))..).((((((.....)))))).......-..... ( -36.10) >DroYak_CAF1 14072 119 - 1 AUAAACUU-UUGUGCGGCGCCAUCUGUUGGCGACCAUGCUAAGUUAACAUAAAACUGCAUCGGCUAAACUUAAAUUUUAGCAGAGCUUUCACCGCUGUUAAAAUUCGCCCACUCCCACAG ........-..(((.(((((((.....))))(.((((((..((((.......)))))))).)))........(((((((((((.(.......).))))))))))).))))))........ ( -28.90) >consensus AUAAACUUGCUCUGCACCGCCAUCUGUUGGCGACCACUCGAAGUUUCCUUGAAAUUGCAUCGGCUAAGCUUUCAGUUUAGCAGAGCUUGCAGCGCUGUUAAGAUGCACCCACUC_CACAG ...(((..((.(((((.(((((.....)))))........................((.((.(((((((.....))))))).)))).))))).)).)))..................... (-24.42 = -24.67 + 0.25)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 11:01:00 2006