Sequence ID | X_DroMel_CAF1 |
---|---|
Location | 9,391,858 – 9,391,961 |
Length | 103 |
Max. P | 0.837391 |
Location | 9,391,858 – 9,391,961 |
---|---|
Length | 103 |
Sequences | 4 |
Columns | 120 |
Reading direction | forward |
Mean pairwise identity | 86.55 |
Mean single sequence MFE | -30.40 |
Consensus MFE | -26.95 |
Energy contribution | -28.08 |
Covariance contribution | 1.12 |
Combinations/Pair | 1.06 |
Mean z-score | -1.71 |
Structure conservation index | 0.89 |
SVM decision value | 0.74 |
SVM RNA-class probability | 0.837391 |
Prediction | RNA |
Download alignment: ClustalW | MAF
>X_DroMel_CAF1 9391858 103 + 22224390 -----------------ACAGACACACAGAAGGAAAGCCACACAGACAGGCACACGUGUAGAAUGGCAUGCCAUACAUACAUGGCCAUUAGUGUUGUGUUGUUGUCGUUAUCAUGCACAA -----------------...((((.(((...((....))((((((((.(((...((((((..((((....))))...)))))))))....)).))))))))))))).............. ( -24.90) >DroSec_CAF1 5853 103 + 1 -----------------ACAUGUGUGCAGAAGGAAAGCCACACAGACAGGCACACGUGUAGAAUGGCAUGCCAUACAUACAUGGCCAUUAGUGUUGUGUUGUUGUCGUUAUCAUGCACAA -----------------.....((((((.((.((.(((.((((((((.(((...((((((..((((....))))...)))))))))....)).)))))).))).)).))....)))))). ( -32.70) >DroSim_CAF1 10190 103 + 1 -----------------ACAUGUGUGCAGAAGGAAAGCCACACAGACAGGCACACGUGUAGAAUGGCAUGCCAUACAUACAUGGCCAUUAGUGUUGUGUUAUUGUCGUUAUCAUGCACAA -----------------.....((((((.((.((.....((((((((.(((...((((((..((((....))))...)))))))))....)).)))))).....)).))....)))))). ( -29.60) >DroYak_CAF1 10279 120 + 1 CAUGUACAUAUAUGUAUGUAUGUGUGCAGAAGGAAAGCCACACGGACAGGCACACGUGUAGAAUGCCAUACCAUACAUACACGGCCAUUAGUGUUGUGUUGUUGUCGUUAUCAUGCACAA .(((((((((....)))))))))(((((.((.((.(((.(((((.((((((...((((((..(((......)))...))))))))).....)))))))).))).)).))....))))).. ( -34.40) >consensus _________________ACAUGUGUGCAGAAGGAAAGCCACACAGACAGGCACACGUGUAGAAUGGCAUGCCAUACAUACAUGGCCAUUAGUGUUGUGUUGUUGUCGUUAUCAUGCACAA ......................((((((.((.((.(((.(((((.((((((...((((((..((((....))))...))))))))).....)))))))).))).)).))....)))))). (-26.95 = -28.08 + 1.12)
Location | 9,391,858 – 9,391,961 |
---|---|
Length | 103 |
Sequences | 4 |
Columns | 120 |
Reading direction | reverse |
Mean pairwise identity | 86.55 |
Mean single sequence MFE | -29.26 |
Consensus MFE | -23.24 |
Energy contribution | -22.80 |
Covariance contribution | -0.44 |
Combinations/Pair | 1.16 |
Mean z-score | -1.75 |
Structure conservation index | 0.79 |
SVM decision value | 0.53 |
SVM RNA-class probability | 0.771919 |
Prediction | RNA |
Download alignment: ClustalW | MAF
>X_DroMel_CAF1 9391858 103 - 22224390 UUGUGCAUGAUAACGACAACAACACAACACUAAUGGCCAUGUAUGUAUGGCAUGCCAUUCUACACGUGUGCCUGUCUGUGUGGCUUUCCUUCUGUGUGUCUGU----------------- ((((........))))..((((((((........(((((..((..((.(((((((..........)))))))))..))..))))).........))))).)))----------------- ( -26.43) >DroSec_CAF1 5853 103 - 1 UUGUGCAUGAUAACGACAACAACACAACACUAAUGGCCAUGUAUGUAUGGCAUGCCAUUCUACACGUGUGCCUGUCUGUGUGGCUUUCCUUCUGCACACAUGU----------------- ....(((((.....((((...((((......((((((.((((.......))))))))))......))))...))))((((..(........)..)))))))))----------------- ( -28.80) >DroSim_CAF1 10190 103 - 1 UUGUGCAUGAUAACGACAAUAACACAACACUAAUGGCCAUGUAUGUAUGGCAUGCCAUUCUACACGUGUGCCUGUCUGUGUGGCUUUCCUUCUGCACACAUGU----------------- ....(((((.....((((...((((......((((((.((((.......))))))))))......))))...))))((((..(........)..)))))))))----------------- ( -28.80) >DroYak_CAF1 10279 120 - 1 UUGUGCAUGAUAACGACAACAACACAACACUAAUGGCCGUGUAUGUAUGGUAUGGCAUUCUACACGUGUGCCUGUCCGUGUGGCUUUCCUUCUGCACACAUACAUACAUAUAUGUACAUG .((((((((..................((....))...(((((((((((....(((((.(.....).))))).....(((..(........)..))).))))))))))).)))))))).. ( -33.00) >consensus UUGUGCAUGAUAACGACAACAACACAACACUAAUGGCCAUGUAUGUAUGGCAUGCCAUUCUACACGUGUGCCUGUCUGUGUGGCUUUCCUUCUGCACACAUGU_________________ .((((((.((....((.....((((((((.....((((((((..(.((((....)))).)...))))).)))))).))))).....))..))))))))...................... (-23.24 = -22.80 + -0.44)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 11:00:49 2006