Sequence ID | X_DroMel_CAF1 |
---|---|
Location | 9,386,230 – 9,386,350 |
Length | 120 |
Max. P | 0.643625 |
Location | 9,386,230 – 9,386,350 |
---|---|
Length | 120 |
Sequences | 4 |
Columns | 120 |
Reading direction | reverse |
Mean pairwise identity | 90.69 |
Mean single sequence MFE | -32.40 |
Consensus MFE | -23.51 |
Energy contribution | -23.07 |
Covariance contribution | -0.44 |
Combinations/Pair | 1.15 |
Mean z-score | -1.96 |
Structure conservation index | 0.73 |
SVM decision value | 0.23 |
SVM RNA-class probability | 0.643625 |
Prediction | RNA |
Download alignment: ClustalW | MAF
>X_DroMel_CAF1 9386230 120 - 22224390 UUUCCAGGAAGGCAACGUGAAAGGAAGCGACCGACAGGCAGCCAGGAAAAUGGCACACAAAAAAUUGUAGUCAAGGAGCAAUAUUUUCACUGCAUCCUCAAUGCAGGCAAAAUGCUACAC .....((((..(((..(((((((...((..((....(((.((((......))))..((((....)))).)))..)).))....)))))))))).)))).......(((.....))).... ( -28.20) >DroSec_CAF1 245 120 - 1 UUUCCAGGAAGGCAACGUGAAAGGAAGUGACCGACAGGCAGCCAGGAAAAUGGCACACAAAAAAUUGGAGUCAAGCAACAAUAUUUUGGCUGCAUCCUCAAUGCAGGCAAAAUGCUCCAC .((((.....(....)......))))(((.((....))..((((......)))).))).......((((((...........((((((.((((((.....)))))).)))))))))))). ( -34.80) >DroSim_CAF1 3321 120 - 1 UUUCCAGGAAGGCAACGUGAAAGGAAGUGACCGACAGGCAGCCAGGAAAAUGGCACACAAAAAAUUGGAGUCAAGCAACAAUAUUUUCACUGCAUCCUCAAUGCAGGCAAAAUGCUCCAC .((((.....(....)......))))(((.((....))..((((......)))).))).......((((((...........(((((..((((((.....))))))..))))))))))). ( -29.50) >DroYak_CAF1 3713 120 - 1 UUUCCAGGUAGGCAAAGUGAAAUGCGGCGACCGACAGGCAGCCAGGAAACUGGCAAGCACAAAGUUGGAGUCGAGCAACAAUAUUUUCACUGCAUCUUCAAUGCAGGCAAAACACUCUAC .......((((....((((...((((((..(((((..((.(((((....)))))..)).....))))).))).................((((((.....)))))))))...)))))))) ( -37.10) >consensus UUUCCAGGAAGGCAACGUGAAAGGAAGCGACCGACAGGCAGCCAGGAAAAUGGCACACAAAAAAUUGGAGUCAAGCAACAAUAUUUUCACUGCAUCCUCAAUGCAGGCAAAAUGCUCCAC ................(((.........(.((....))).((((......)))).))).......((((((...........(((((..((((((.....))))))..))))))))))). (-23.51 = -23.07 + -0.44)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 11:00:37 2006