Sequence ID | X_DroMel_CAF1 |
---|---|
Location | 9,385,462 – 9,385,569 |
Length | 107 |
Max. P | 0.510139 |
Location | 9,385,462 – 9,385,569 |
---|---|
Length | 107 |
Sequences | 3 |
Columns | 120 |
Reading direction | forward |
Mean pairwise identity | 85.55 |
Mean single sequence MFE | -40.87 |
Consensus MFE | -32.53 |
Energy contribution | -32.09 |
Covariance contribution | -0.44 |
Combinations/Pair | 1.09 |
Mean z-score | -1.65 |
Structure conservation index | 0.80 |
SVM decision value | -0.05 |
SVM RNA-class probability | 0.510139 |
Prediction | RNA |
Download alignment: ClustalW | MAF
>X_DroMel_CAF1 9385462 107 + 22224390 ACCCUUGGCUGGACAAAUGGGUCAUUAAUUGACAGCCAACGGGUUGCGGGGA-----U------CCCCCUUUGCGAAUCUUCAUAACCG--UAGUGGCUGCUCGCAGUCAUGGGUUAAGG ((((.(((((((((......))).......((((((((((((.((((((((.-----.------..))))..))))..........)))--)..)))))).)).)))))).))))..... ( -39.70) >DroSim_CAF1 2573 104 + 1 ACCCUUGGCUGGCCAAAUGGGUCAUUAAUUGACAGCCAGCGGG-UGCGGGGA-----U------CC--CUUUGCGAAUCUUCAUAACCG--UAGUGGCUGCUCGCAGUCAUGGGUUAAGG ((((((((((..((....))((((.....)))))))))).)))-)((((((.-----.------..--)))))).........(((((.--..(((((((....))))))).)))))... ( -39.60) >DroYak_CAF1 2875 119 + 1 ACCCUUGGCUGGCCAAAUGGGUCAUUAAUUGACAGCCAGCGGG-UGCGGAAAGGGGGUAACUGCUUCCCUGUGCGAAUCUUCAUAACCAGUGAGUGGCUGCUCGCAGUCAUGGGUUAAGG ((((((((((..((....))((((.....)))))))))).)))-)(((...(((((((....)).))))).))).........(((((.....(((((((....))))))).)))))... ( -43.30) >consensus ACCCUUGGCUGGCCAAAUGGGUCAUUAAUUGACAGCCAGCGGG_UGCGGGGA_____U______CCCCCUUUGCGAAUCUUCAUAACCG__UAGUGGCUGCUCGCAGUCAUGGGUUAAGG .((((((((((..(((.(((....))).))).))))))).))).(((((((.............))))....)))........(((((.....(((((((....))))))).)))))... (-32.53 = -32.09 + -0.44)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 11:00:36 2006