Sequence ID | X_DroMel_CAF1 |
---|---|
Location | 9,383,510 – 9,383,609 |
Length | 99 |
Max. P | 0.993585 |
Location | 9,383,510 – 9,383,609 |
---|---|
Length | 99 |
Sequences | 3 |
Columns | 120 |
Reading direction | forward |
Mean pairwise identity | 79.94 |
Mean single sequence MFE | -23.77 |
Consensus MFE | -20.37 |
Energy contribution | -20.27 |
Covariance contribution | -0.11 |
Combinations/Pair | 1.10 |
Mean z-score | -2.44 |
Structure conservation index | 0.86 |
SVM decision value | 2.41 |
SVM RNA-class probability | 0.993585 |
Prediction | RNA |
Download alignment: ClustalW | MAF
>X_DroMel_CAF1 9383510 99 + 22224390 AAUGGAUUUGCG--UGCACAUAAUCAUGCUAUCC--------AUCC-------UCCAAGUUGUCGCCA----UCCACACGCAGUGGACAUCUGGCAAUCCAUUCAUAUUCCCGCAAUUAA .((((((..(((--((........))))).))))--------))..-------...........((((----(((((.....)))))....))))......................... ( -23.20) >DroSim_CAF1 763 92 + 1 AAUGGAUUUGCG--UGCGCAUAAUCAUGCUAUCC--------AUCC--------------UGUCGCCA----UCCACACGCAGUGGACAUCUGGCAAUCCAUUCAUAUUCCCGCAAUUAA .((((((..(((--((........))))).))))--------))..--------------....((((----(((((.....)))))....))))......................... ( -23.20) >DroYak_CAF1 950 120 + 1 AAUGGAGUUGUGUGUGUACAUAACCAUGCUAUCCAACUAUCCAUCCUAUCCAUUCCAAGUUGUCGCCAUCCAUCCACACGCAGUGGACAUCUGGCAAUCCAUUCAUAUUCCCACAAUUAA (((((((((((((....))))))).........(((((...................)))))..((((....(((((.....)))))....))))..))))))................. ( -24.91) >consensus AAUGGAUUUGCG__UGCACAUAAUCAUGCUAUCC________AUCC_______UCCAAGUUGUCGCCA____UCCACACGCAGUGGACAUCUGGCAAUCCAUUCAUAUUCCCGCAAUUAA ((((((((.......(((........)))...................................((((....(((((.....)))))....))))))))))))................. (-20.37 = -20.27 + -0.11)
Location | 9,383,510 – 9,383,609 |
---|---|
Length | 99 |
Sequences | 3 |
Columns | 120 |
Reading direction | reverse |
Mean pairwise identity | 79.94 |
Mean single sequence MFE | -26.23 |
Consensus MFE | -23.70 |
Energy contribution | -23.03 |
Covariance contribution | -0.66 |
Combinations/Pair | 1.10 |
Mean z-score | -0.40 |
Structure conservation index | 0.90 |
SVM decision value | 0.08 |
SVM RNA-class probability | 0.571198 |
Prediction | RNA |
Download alignment: ClustalW | MAF
>X_DroMel_CAF1 9383510 99 - 22224390 UUAAUUGCGGGAAUAUGAAUGGAUUGCCAGAUGUCCACUGCGUGUGGA----UGGCGACAACUUGGA-------GGAU--------GGAUAGCAUGAUUAUGUGCA--CGCAAAUCCAUU ....(((((...(((((((((..((((((....(((((.....)))))----))))))((.((....-------)).)--------).....)))..))))))...--)))))....... ( -24.50) >DroSim_CAF1 763 92 - 1 UUAAUUGCGGGAAUAUGAAUGGAUUGCCAGAUGUCCACUGCGUGUGGA----UGGCGACA--------------GGAU--------GGAUAGCAUGAUUAUGCGCA--CGCAAAUCCAUU ....((((((.(((........))).))....((((((.....)))))----).))))..--------------.(((--------((((.((((....))))(..--..)..))))))) ( -24.00) >DroYak_CAF1 950 120 - 1 UUAAUUGUGGGAAUAUGAAUGGAUUGCCAGAUGUCCACUGCGUGUGGAUGGAUGGCGACAACUUGGAAUGGAUAGGAUGGAUAGUUGGAUAGCAUGGUUAUGUACACACACAACUCCAUU ....(((((.(.(((((((((..((((((..(((((((.....)))))))..))))))(((((....((.......))....))))).....)))..)))))).)...)))))....... ( -30.20) >consensus UUAAUUGCGGGAAUAUGAAUGGAUUGCCAGAUGUCCACUGCGUGUGGA____UGGCGACAACUUGGA_______GGAU________GGAUAGCAUGAUUAUGUGCA__CGCAAAUCCAUU ....(((((..............((((((....(((((.....)))))....)))))).................................((((....)))).....)))))....... (-23.70 = -23.03 + -0.66)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 11:00:35 2006