Sequence ID | X_DroMel_CAF1 |
---|---|
Location | 9,375,663 – 9,375,763 |
Length | 100 |
Max. P | 0.759639 |
Location | 9,375,663 – 9,375,763 |
---|---|
Length | 100 |
Sequences | 3 |
Columns | 102 |
Reading direction | forward |
Mean pairwise identity | 72.24 |
Mean single sequence MFE | -18.87 |
Consensus MFE | -12.45 |
Energy contribution | -12.57 |
Covariance contribution | 0.11 |
Combinations/Pair | 1.06 |
Mean z-score | -1.35 |
Structure conservation index | 0.66 |
SVM decision value | 0.50 |
SVM RNA-class probability | 0.759639 |
Prediction | RNA |
Download alignment: ClustalW | MAF
>X_DroMel_CAF1 9375663 100 + 22224390 UGAAUUUUAAACGCCAUUCGC--CGCAGGUGCGAAUGUCGUGACUUGAAUUCCCGGCCUUUUCUUUUUCUUGACGCACAGCCAAAACUUUUCUUCGGUUUGU .((((((...(((.(((((((--(....).))))))).))).....))))))..(((....((........))......))).(((((.......))))).. ( -20.60) >DroPse_CAF1 183282 83 + 1 UGAAUUUUAAACGCCAUUCGCCCUCCAGGUGCAAAUGUCGUGACUUGAAUUUCC---UU-----UUUCC-----------ACAAACUUUUCCUUCCAUUUUU .(((.((((((((.((((.((((....)).)).)))).)))...))))).))).---..-----.....-----------...................... ( -12.30) >DroEre_CAF1 163304 94 + 1 UGAAUUUUAAACGCCAUUCGC--CCCAGGUGCGAAUGUCGUGACUUGAAUUCCCGGCUC-----UUUUCUUGCCGCGCAGCCGA-ACUUUUUCCCAAUUUUU .((((((...(((.(((((((--(....).))))))).))).....)))))).((((((-----............).))))).-................. ( -23.70) >consensus UGAAUUUUAAACGCCAUUCGC__CCCAGGUGCGAAUGUCGUGACUUGAAUUCCCGGCUU_____UUUUCUUG_CGC_CAGCCAAAACUUUUCUUCAAUUUUU .((((((...(((.(((((((.........))))))).))).....)))))).................................................. (-12.45 = -12.57 + 0.11)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 11:00:31 2006