Sequence ID | X_DroMel_CAF1 |
---|---|
Location | 9,358,286 – 9,358,386 |
Length | 100 |
Max. P | 0.561008 |
Location | 9,358,286 – 9,358,386 |
---|---|
Length | 100 |
Sequences | 6 |
Columns | 103 |
Reading direction | reverse |
Mean pairwise identity | 80.19 |
Mean single sequence MFE | -28.77 |
Consensus MFE | -13.99 |
Energy contribution | -14.47 |
Covariance contribution | 0.47 |
Combinations/Pair | 1.12 |
Mean z-score | -2.23 |
Structure conservation index | 0.49 |
SVM decision value | 0.05 |
SVM RNA-class probability | 0.561008 |
Prediction | RNA |
Download alignment: ClustalW | MAF
>X_DroMel_CAF1 9358286 100 - 22224390 AG-GCAAUUUUUCAACUUCCAAACAAGUCGACUUGUCAGUAUCUCUCAAGGACUCAUCUCUCGUCCUUGAGUCGAC--GAAUUAAGCCGGCGUCUUGUUGCCU .(-((.....(((.........(((((....)))))..((....(((((((((.........)))))))))...))--)))....)))((((......)))). ( -30.20) >DroSec_CAF1 136613 89 - 1 AA-GCAAUUUUUCAACUUCCAAACAAGUCGACUUGUCAG-----------GACUCAUCCCUGGUCCUUGAGUCCGC--GAAUUAAGCCGGCGUCUUGUUGCCU ..-((.................(((((....)))))..(-----------((((((.(....)....)))))))))--..........((((......)))). ( -22.60) >DroSim_CAF1 134543 100 - 1 AG-GCAAUUUUUUAACUUCCAAACAAGUCGACUUGUCAGGAUCGCUCAAGGACUCAUCCCUGGUCCUUGAGUCCUC--GAAUUAAGCCGGCGUCUUGUUGCCU .(-((............(((..(((((....)))))..)))..((((((((((.((....))))))))))))....--.......)))((((......)))). ( -35.40) >DroEre_CAF1 145936 100 - 1 AG-GCAAUUUUUUAACUUCCAAACAAGGCGACUUGUCAGGCUCGCUCAAGGACUCAUCUCUGAUCCCUGAGUCCUC--GAAUUAAGCCGGCGUCGUGUUGCCU ((-(((((.......(((......)))(((((..(((.((((...((.((((((((...........)))))))).--))....))))))))))))))))))) ( -33.60) >DroYak_CAF1 140824 100 - 1 GG-GCAAUUUUUUAGCUUCCAAACAGGACGACUUGUCAGGCUCUCGCAAGGACUCAUCUCUGGCCCUUGAGUCCUC--GAAUUAAGCCGGCGUCUUGUUGCCU ((-(((((......(((.....(((((....)))))..((((.(((..((((((((...........)))))))))--))....))))))).....))))))) ( -32.50) >DroAna_CAF1 155667 82 - 1 AGAGCAAU-UUUUAACUUCUAGACAGGACA-CU-------------------CUCAUCUCUGGGCCUUGAGUCCUUGGGAAUUAAGCUGGCGUCGUGUUGCUC .(((((((-.........(((((...((..-..-------------------.))...)))))(((((((.(((...))).))))...))).....))))))) ( -18.30) >consensus AG_GCAAUUUUUUAACUUCCAAACAAGUCGACUUGUCAGG_UC_CUCAAGGACUCAUCUCUGGUCCUUGAGUCCUC__GAAUUAAGCCGGCGUCUUGUUGCCU ...((.................(((((....)))))..............((((((...........))))))............)).((((......)))). (-13.99 = -14.47 + 0.47)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 11:00:30 2006