Sequence ID | X_DroMel_CAF1 |
---|---|
Location | 9,356,079 – 9,356,170 |
Length | 91 |
Max. P | 0.962417 |
Location | 9,356,079 – 9,356,170 |
---|---|
Length | 91 |
Sequences | 6 |
Columns | 110 |
Reading direction | reverse |
Mean pairwise identity | 90.69 |
Mean single sequence MFE | -21.10 |
Consensus MFE | -18.67 |
Energy contribution | -18.87 |
Covariance contribution | 0.20 |
Combinations/Pair | 1.05 |
Mean z-score | -2.08 |
Structure conservation index | 0.89 |
SVM decision value | 1.54 |
SVM RNA-class probability | 0.962417 |
Prediction | RNA |
Download alignment: ClustalW | MAF
>X_DroMel_CAF1 9356079 91 - 22224390 -------------AACAAUCAAAGUAAACAAAAGUUGGC------GCCGCAAAAAUCAAGCUCAGCUGUGGCAAACUUUUGCAGUUGAUACAAAAUUUUUGCUAACCGAA -------------.....................((((.------...((((((((.....(((((((..(.......)..)))))))......))))))))...)))). ( -19.50) >DroSec_CAF1 134482 89 - 1 -------------AACAAUCAAAGUAAACAAAAGUUGGC------GCCGCAAAAAUCAAGCUCAGCUGUGGCAAACUUUUGCAGUUGAUUUAAA-UU-UUGCUAACCGAA -------------....................((((((------...((.........))(((((((..(.......)..)))))))......-..-..)))))).... ( -17.90) >DroSim_CAF1 131960 90 - 1 -------------AACAAUCAAAGUAAACAAAAGUUGGC------GCCGCAAAAAUCAAGCUCAGCUGUGGCAAACUUUUGCAGUUGAUUUAAA-UUUUUGCUAACCGAA -------------.....................((((.------...((((((((..((.(((((((..(.......)..))))))).))..)-)))))))...)))). ( -20.60) >DroEre_CAF1 143853 90 - 1 -------------AACAAUCAAAGUAAACAAAAGUUGGC------GCCGCAAAAAUCAAGCUCAGCUGUGGCAAACUUUUGCAGUUGAUUUAAA-UUUUUGCUAACCGAA -------------.....................((((.------...((((((((..((.(((((((..(.......)..))))))).))..)-)))))))...)))). ( -20.60) >DroYak_CAF1 138635 90 - 1 -------------AACAAUCAAAGUAAACAAAAGUUGGC------GCCGCAAAAAUCAAGCUCAGCUGUGGCAAACUUUUGCAGUUGAUUUAAA-UUUUUGCUAACCGAA -------------.....................((((.------...((((((((..((.(((((((..(.......)..))))))).))..)-)))))))...)))). ( -20.60) >DroAna_CAF1 153271 109 - 1 GGAGAACGGCGAGAACAAUCAAAGUAAACAAAAGUUGUCGACCCAGCCGCAGAAAUCAAGCUCAGCUGUGGCAAAGUUUUGCAGUUGAUUUAAA-UUUUUGCUUACCGAA ((.....(((((......))...((..(((.....)))..))...)))((((((((..((.(((((((..(.......)..))))))).))..)-)))))))...))... ( -27.40) >consensus _____________AACAAUCAAAGUAAACAAAAGUUGGC______GCCGCAAAAAUCAAGCUCAGCUGUGGCAAACUUUUGCAGUUGAUUUAAA_UUUUUGCUAACCGAA ..................((................(((......)))(((((((......(((((((..(.......)..))))))).......))))))).....)). (-18.67 = -18.87 + 0.20)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 11:00:29 2006