Sequence ID | X_DroMel_CAF1 |
---|---|
Location | 9,350,510 – 9,350,605 |
Length | 95 |
Max. P | 0.659032 |
Location | 9,350,510 – 9,350,605 |
---|---|
Length | 95 |
Sequences | 5 |
Columns | 98 |
Reading direction | reverse |
Mean pairwise identity | 87.16 |
Mean single sequence MFE | -26.48 |
Consensus MFE | -18.17 |
Energy contribution | -18.85 |
Covariance contribution | 0.68 |
Combinations/Pair | 1.09 |
Mean z-score | -2.03 |
Structure conservation index | 0.69 |
SVM decision value | 0.26 |
SVM RNA-class probability | 0.659032 |
Prediction | RNA |
Download alignment: ClustalW | MAF
>X_DroMel_CAF1 9350510 95 - 22224390 GCGGCCAUUUGAUUUGCAAAAUGUGCGGGACAAACAAACAUCGCUUGGUCCUCGCUAAGCA---CCAUGAUCAUAAUCAUGUAGGGCAAAAUUAAUGG ...(((.((((.((((((.....)))))).))))........(((((((....))))))).---.((((((....))))))...)))........... ( -23.60) >DroSec_CAF1 130434 95 - 1 GCGGCCAUUUGGUUUGCAAAAUGUGCGGGGCAAACAAACAUCAGUUGGUCCUCGCUAAGCA---CCAUGAUCAUAAUCAUGUAGGGCAAAAUUAAUGG ....(((((...(((((.......(((((((.(((........))).)))).)))......---.((((((....))))))....)))))...))))) ( -26.40) >DroSim_CAF1 127952 95 - 1 GCGGCCAUUUGGUUUGCAAAAUGUGCGGGGCAAACAAACAUCAGUUGGUCCUCGCUAAGCA---CCAUGAUCAUAAUCAUGUAGGGCAAAAUUAAUGG ....(((((...(((((.......(((((((.(((........))).)))).)))......---.((((((....))))))....)))))...))))) ( -26.40) >DroEre_CAF1 139612 86 - 1 ACGGUCAUU-----UGCAAAAUAUGCGGGGCAA----ACAUCAGUUUGUCCUCGCUAAGCA---UCAUCAUCAUAAUCAUGUAGGGCAAAAUUAAUAG .......((-----(((.......(((((((((----((....)))))))).)))...(((---(.((.......)).))))...)))))........ ( -20.70) >DroYak_CAF1 133995 94 - 1 GUGGCCAUUUGGUUUGCAAAAUGUGAGGGGCAA----ACAUCGGUUUGUCCUCGCUAAGCUUAACCAUGAUUAUAAUCAUGUAGGGCAAACUUAAUGG ....(((((.(((((((.....(((((((.(((----((....))))))))))))....((((..((((((....))))))))))))))))).))))) ( -35.30) >consensus GCGGCCAUUUGGUUUGCAAAAUGUGCGGGGCAAACAAACAUCAGUUGGUCCUCGCUAAGCA___CCAUGAUCAUAAUCAUGUAGGGCAAAAUUAAUGG ....(((((...(((((.......(((((((................)))).)))..........((((((....))))))....)))))...))))) (-18.17 = -18.85 + 0.68)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 11:00:28 2006