Sequence ID | X_DroMel_CAF1 |
---|---|
Location | 9,341,319 – 9,341,426 |
Length | 107 |
Max. P | 0.842165 |
Location | 9,341,319 – 9,341,426 |
---|---|
Length | 107 |
Sequences | 6 |
Columns | 111 |
Reading direction | forward |
Mean pairwise identity | 82.20 |
Mean single sequence MFE | -32.77 |
Consensus MFE | -18.30 |
Energy contribution | -19.33 |
Covariance contribution | 1.03 |
Combinations/Pair | 1.12 |
Mean z-score | -3.10 |
Structure conservation index | 0.56 |
SVM decision value | 0.75 |
SVM RNA-class probability | 0.842165 |
Prediction | RNA |
Download alignment: ClustalW | MAF
>X_DroMel_CAF1 9341319 107 + 22224390 UUAAAUUAAAUUGCUGUUGUUUUUUUUUUUAUU-UUGCUGGCG---AGAGCCGCGGUUUUCGAACUGCGACGGCGCGCCUUUGGAAACCAACUGAAAAAAAAAACACAGCA ...........((((((.(((((((((((((..-..((.(((.---...)))))((((((((((.((((....))))..))))))))))...))))))))))))))))))) ( -41.70) >DroPse_CAF1 139585 97 + 1 UCGUGUCUGACUGUCGUUGCUUU----UCUCU-----CUGUCACGUCGAACUGCGA---ACGAACUGCGACGGCGCGCCUAUGAAAACCAACUGAGCAAC--AGCACCGAC (((.(((((...((((((((..(----((((.-----(..((.....))...).))---..)))..))))))))((.....((.....)).....))..)--)).))))). ( -22.60) >DroSec_CAF1 121579 103 + 1 UUAAAUUAAAUUGCUGUUGUUUU----UUUAUU-UUGCUGGCG---AGAGCCGCGGUUUUCGAACUGCGACGGCGCGCCUUUGGAAACCAACUGAAAAAAAAAACACAGCA ...........((((((.(((((----(((.((-((((.(((.---...)))))((((((((((.((((....))))..))))))))))....)))))))))))))))))) ( -37.10) >DroSim_CAF1 118401 102 + 1 UUAAAUUAAAUUGCUGUUGUUU-----UUUAUU-UUGCUGGCG---AGAGCCGCGGUUUUCGAACUGCGACGGCGCGCCUUUGGAAACCAACUGAAAAAAAAAACACAGCA ...........((((((.((((-----(((.((-((((.(((.---...)))))((((((((((.((((....))))..))))))))))....)))).))))))))))))) ( -37.40) >DroEre_CAF1 130369 101 + 1 UUAAAUUAAACUGCUGUUGUUUU----UUAAUU-UUGAUGGCG---AGAGCCGCGGUUUUCGAACUGCGACGGCGCGCCUUUGGAAACCAACUGAAAA--AAAACACAGAA ..........(((.((((.((((----(((...-..(.((((.---...)))))((((((((((.((((....))))..))))))))))...))))))--).))))))).. ( -31.10) >DroYak_CAF1 124258 103 + 1 UUAAAUUAAACUGUUGUUGUUUC----UUAAUUUUUGUUGGCA---AGAGCCGCGGUUUUCGAACUGCGACGGCGCGCCUUUGGAAACCAACUGAAAA-AAAAACACAGAA ..........((((.(((.((((----.........((.(((.---...)))))((((((((((.((((....))))..))))))))))....)))).-...))))))).. ( -26.70) >consensus UUAAAUUAAACUGCUGUUGUUUU____UUUAUU_UUGCUGGCG___AGAGCCGCGGUUUUCGAACUGCGACGGCGCGCCUUUGGAAACCAACUGAAAAAAAAAACACAGAA .............((((.((((.................(((.......)))..((((((((((.((((....))))..))))))))))............)))))))).. (-18.30 = -19.33 + 1.03)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 11:00:23 2006