Sequence ID | X_DroMel_CAF1 |
---|---|
Location | 9,340,700 – 9,340,801 |
Length | 101 |
Max. P | 0.901127 |
Location | 9,340,700 – 9,340,801 |
---|---|
Length | 101 |
Sequences | 4 |
Columns | 101 |
Reading direction | forward |
Mean pairwise identity | 94.27 |
Mean single sequence MFE | -20.59 |
Consensus MFE | -18.63 |
Energy contribution | -19.13 |
Covariance contribution | 0.50 |
Combinations/Pair | 1.00 |
Mean z-score | -1.93 |
Structure conservation index | 0.90 |
SVM decision value | 1.02 |
SVM RNA-class probability | 0.901127 |
Prediction | RNA |
Download alignment: ClustalW | MAF
>X_DroMel_CAF1 9340700 101 + 22224390 UCGACCGGCAAGAGACAGCUUCUUCUUUUUCUGGUUCACAUGUCUUCGUUUGUCUAAAAAAAAAAAUUUCAAACGAUUUUCUUCGGUGGUUUUCCACAUUU ..((((((.((((((........)))))).)))))).........(((((((.................))))))).........((((....)))).... ( -21.83) >DroSec_CAF1 120971 97 + 1 UCGACCGGCAAGAGACAGCUUCUUCUUUUUCUGGUUCACAUAUCUUCGUUUGCCUAAA----AAAAUUUCAAACGAUUUUCUUCGGUGGUUUUCCACAUUU ..((((((.((((((........)))))).)))))).........(((((((......----.......))))))).........((((....)))).... ( -21.12) >DroEre_CAF1 129770 96 + 1 UCGACCGGCAAGAGACAGCUUCUUCUUUUUCUGGUUCACAUGUCUUCGUUUGCCUAAA-----AAAUCUCAAACGAUUUUCUUCGCUGGUUUUCCACAUUU ..(((((((((((((((.......((......))......)))).(((((((......-----......)))))))...)))).))))))).......... ( -21.62) >DroYak_CAF1 123637 96 + 1 UCGACCGGCAAGAGACAGCUUCUUCGUUUUCUGGUUCACAUGUCUUCGUUUGCCUAAA-----AAAUUUCAAACGAUUUUCUUUGGUGGUUUUCCACAUUU ......(((((((((((......(((.....)))......))))))...)))))....-----..........(((......)))((((....)))).... ( -17.80) >consensus UCGACCGGCAAGAGACAGCUUCUUCUUUUUCUGGUUCACAUGUCUUCGUUUGCCUAAA_____AAAUUUCAAACGAUUUUCUUCGGUGGUUUUCCACAUUU ..((((((.((((((........)))))).)))))).........(((((((.................))))))).........((((....)))).... (-18.63 = -19.13 + 0.50)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 11:00:22 2006