Sequence ID | X_DroMel_CAF1 |
---|---|
Location | 1,074,796 – 1,074,904 |
Length | 108 |
Max. P | 0.726119 |
Location | 1,074,796 – 1,074,904 |
---|---|
Length | 108 |
Sequences | 5 |
Columns | 114 |
Reading direction | reverse |
Mean pairwise identity | 74.09 |
Mean single sequence MFE | -29.08 |
Consensus MFE | -11.10 |
Energy contribution | -12.34 |
Covariance contribution | 1.24 |
Combinations/Pair | 1.06 |
Mean z-score | -1.85 |
Structure conservation index | 0.38 |
SVM decision value | 0.41 |
SVM RNA-class probability | 0.726119 |
Prediction | RNA |
Download alignment: ClustalW | MAF
>X_DroMel_CAF1 1074796 108 - 22224390 AAAAGCGAAGACACAGUCGGCGAAAGAUGACUAGGUGCUCCU---GA---ACAUUUCCAAACGAGUUUUCGUUCAAAUAUUCCCGGGAAUCUAAGUCCGUCUUUGUCUCGGCUU ..((((..(((((.((.((((...((((..(..((......(---((---((..(((.....))).....)))))......))..)..))))..).))).)).)))))..)))) ( -29.00) >DroSec_CAF1 8498 111 - 1 AAAAGCGAAGACACAGUCGGCGAAAGGUGACUAGGUGCUUCUUUUCU---AUACUCGGAAACGAGUUUUCGUUCAAAUAUUCCCGAGAAUCUANNNNNNNNNNNNNNNNNNNNN ......((((.((((((((.(....).)))))..)))))))......---..(((((....)))))(((((............))))).......................... ( -26.40) >DroSim_CAF1 5249 108 - 1 AAAAGCGAAGACGCAGUCGGCGAAAGGUGACUAGGUGCUCGU---GA---ACAUUUCCAAACGAGUUUUCGUUCAAAUAUUCCCGAGAAUCUAAGUCCGUCUUUGUCUCAGCUU ....(((((((((..((((.(....).))))(((((.((((.---((---(.((((...((((......)))).)))).))).)))).)))))....)))))))))........ ( -33.80) >DroEre_CAF1 15460 111 - 1 CAAAGCGAAGACACAGUCGGCGACAGAUAACUAGGUGCUCCC---GAAACGAGUUUUAAAACGAGUUUUCAUUCGAAUAUACCCGAGAGUCUAAGUCCGUCUCUGUCUCGCUUU .(((((((.((((.((.((((...((((.....(((((((..---.....)))).......(((((....))))).....))).....))))..).))).)).))))))))))) ( -30.10) >DroYak_CAF1 7890 94 - 1 CAAAGCGCAGACACACUCGGCGAAAGAUAACUAGGUGCUCCU---GA---GCAUUUUCAAACGAGUUCUCGUUUGAAUAUUCCCGAGAAUCCAAGUCCGU-------------- ......((.(((...(((((.(((.........((((((...---.)---)))))(((((((((....)))))))))..)))))))).......))).))-------------- ( -26.10) >consensus AAAAGCGAAGACACAGUCGGCGAAAGAUGACUAGGUGCUCCU___GA___ACAUUUCCAAACGAGUUUUCGUUCAAAUAUUCCCGAGAAUCUAAGUCCGUCU_UGUCUC___UU ...(((((((((..(((((.(....).))))).((....)).......................)))))))))......................................... (-11.10 = -12.34 + 1.24)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 09:42:19 2006