Sequence ID | X_DroMel_CAF1 |
---|---|
Location | 9,337,252 – 9,337,371 |
Length | 119 |
Max. P | 0.939303 |
Location | 9,337,252 – 9,337,371 |
---|---|
Length | 119 |
Sequences | 4 |
Columns | 119 |
Reading direction | forward |
Mean pairwise identity | 86.34 |
Mean single sequence MFE | -23.58 |
Consensus MFE | -18.42 |
Energy contribution | -18.55 |
Covariance contribution | 0.13 |
Combinations/Pair | 1.08 |
Mean z-score | -2.27 |
Structure conservation index | 0.78 |
SVM decision value | 1.28 |
SVM RNA-class probability | 0.939303 |
Prediction | RNA |
Download alignment: ClustalW | MAF
>X_DroMel_CAF1 9337252 119 + 22224390 UCUCCACUCCACCAAAACAAAAAAAAAAAACCCAAGCCGCAUGAAACUCUCCUGUUCCUUGGAAAAACAAACAAGAGCUCUGUUUAAUUUCGGUACGACCAAACGCUUGGGCGCUAUGA ..............................(((((((......((((.(((.((((...((......)))))).)))....))))......((.....))....)))))))........ ( -19.60) >DroSec_CAF1 117588 107 + 1 ---------CAAAAAAACAAAA-AAAAAACCCCAAGCCGAAUGGAACUCUCCUGUUCCUUGGAAAAACAAACAAGAGCUCUGUUUAAUUUCGGUACGACCAAACGCUUGGG--CUAUGA ---------.............-.......(((((((.(((((((.((((..((((...((......)))))))))).)))))))......((.....))....)))))))--...... ( -24.00) >DroEre_CAF1 126459 108 + 1 ---------CAAAAAAAAGAAAAAACAAACCCCAAGCCGAAUGGAACUCUCCUGUUCCUUGGAAAAAUAAACAAGAGCUCUGUUUAAAUUCGGUACCAGCAAAUGCUUGGG--CUAUGA ---------................((...(((((((((((((((((......))))).........((((((.(....))))))).)))))))....((....)))))))--...)). ( -25.80) >DroYak_CAF1 120104 108 + 1 ---------CAAAAAAAAAAAAAGAGAGACCCCAAACCGAAUGGAACUCUCCUGUUCCUUGGAAAAACAAACAAGAGCUCUGUUUAAUUUCGGUGCGACCAAACGCUUGGG--UUAUGA ---------..................(((((...((((((.(((((......)))))..........(((((.(....))))))...))))))(((......)))..)))--)).... ( -24.90) >consensus _________CAAAAAAAAAAAAAAAAAAACCCCAAGCCGAAUGGAACUCUCCUGUUCCUUGGAAAAACAAACAAGAGCUCUGUUUAAUUUCGGUACGACCAAACGCUUGGG__CUAUGA ..............................(((((((((((..((((.(((.((((..((.....))..)))).)))....))))...))))((........)))))))))........ (-18.42 = -18.55 + 0.13)
Location | 9,337,252 – 9,337,371 |
---|---|
Length | 119 |
Sequences | 4 |
Columns | 119 |
Reading direction | reverse |
Mean pairwise identity | 86.34 |
Mean single sequence MFE | -29.60 |
Consensus MFE | -26.60 |
Energy contribution | -26.73 |
Covariance contribution | 0.12 |
Combinations/Pair | 1.07 |
Mean z-score | -1.73 |
Structure conservation index | 0.90 |
SVM decision value | 0.82 |
SVM RNA-class probability | 0.858422 |
Prediction | RNA |
Download alignment: ClustalW | MAF
>X_DroMel_CAF1 9337252 119 - 22224390 UCAUAGCGCCCAAGCGUUUGGUCGUACCGAAAUUAAACAGAGCUCUUGUUUGUUUUUCCAAGGAACAGGAGAGUUUCAUGCGGCUUGGGUUUUUUUUUUUUGUUUUGGUGGAGUGGAGA .......((((((((.(((((.....)))))((.((((....(((((((((.((.....)).))))))))).)))).))...))))))))......((((..(((.....)))..)))) ( -31.80) >DroSec_CAF1 117588 107 - 1 UCAUAG--CCCAAGCGUUUGGUCGUACCGAAAUUAAACAGAGCUCUUGUUUGUUUUUCCAAGGAACAGGAGAGUUCCAUUCGGCUUGGGGUUUUUU-UUUUGUUUUUUUG--------- ......--(((((((.(((((.....)))))........((((((((..(((((((.....)))))))))))))))......))))))).......-.............--------- ( -30.60) >DroEre_CAF1 126459 108 - 1 UCAUAG--CCCAAGCAUUUGCUGGUACCGAAUUUAAACAGAGCUCUUGUUUAUUUUUCCAAGGAACAGGAGAGUUCCAUUCGGCUUGGGGUUUGUUUUUUCUUUUUUUUG--------- .((.(.--(((((((......(((....(((..(((((((.....)))))))..)))))).(((((......))))).....))))))).).))................--------- ( -27.50) >DroYak_CAF1 120104 108 - 1 UCAUAA--CCCAAGCGUUUGGUCGCACCGAAAUUAAACAGAGCUCUUGUUUGUUUUUCCAAGGAACAGGAGAGUUCCAUUCGGUUUGGGGUCUCUCUUUUUUUUUUUUUG--------- ......--(((((((.(((((.....)))))........((((((((..(((((((.....)))))))))))))))......))))))).....................--------- ( -28.50) >consensus UCAUAG__CCCAAGCGUUUGGUCGUACCGAAAUUAAACAGAGCUCUUGUUUGUUUUUCCAAGGAACAGGAGAGUUCCAUUCGGCUUGGGGUUUUUUUUUUUGUUUUUUUG_________ ........(((((((.(((((.....)))))........((((((((..(((((((.....)))))))))))))))......))))))).............................. (-26.60 = -26.73 + 0.12)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 11:00:21 2006