Sequence ID | X_DroMel_CAF1 |
---|---|
Location | 9,332,011 – 9,332,105 |
Length | 94 |
Max. P | 0.572072 |
Location | 9,332,011 – 9,332,105 |
---|---|
Length | 94 |
Sequences | 3 |
Columns | 94 |
Reading direction | reverse |
Mean pairwise identity | 90.48 |
Mean single sequence MFE | -22.17 |
Consensus MFE | -18.44 |
Energy contribution | -18.22 |
Covariance contribution | -0.22 |
Combinations/Pair | 1.05 |
Mean z-score | -1.93 |
Structure conservation index | 0.83 |
SVM decision value | 0.08 |
SVM RNA-class probability | 0.572072 |
Prediction | RNA |
Download alignment: ClustalW | MAF
>X_DroMel_CAF1 9332011 94 - 22224390 CUGCGUACAUCCCCCUUCAUCGCCGCAUUCAUCUUUGCUCGUUGGUGGUGGUGGUGGUGUGCAUGUGUUUCAUAAAUUUUGUAUGCUCAUUAUU ....(((((((.((..(((((((((((........))).....)))))))).)).)))))))(((.((..((.......))...)).))).... ( -25.70) >DroSec_CAF1 112517 85 - 1 CAGCGCACAUCCCCCUUCAUCGCCGCAUUCAUCUUUGCUC---------GGUGGUGGUGUGCAUGUGUUUCAUAAAUUUUGUAUGCUCAUUAUU ..((((((.........((((((((((........)))..---------)))))))))))))(((.((..((.......))...)).))).... ( -20.70) >DroSim_CAF1 111594 85 - 1 CAUCGCACAUCCCCCUUCAUCGCCGCAUUCAUCUUUGCUU---------GGUGGUGGUGUGCAUGUGUUUCAUAAAUUUUGUAUGCUCAUUAUU ....((((((.......((((((((((........)))..---------)))))))))))))(((.((..((.......))...)).))).... ( -20.11) >consensus CAGCGCACAUCCCCCUUCAUCGCCGCAUUCAUCUUUGCUC_________GGUGGUGGUGUGCAUGUGUUUCAUAAAUUUUGUAUGCUCAUUAUU ....(((((((((((.........(((........)))...........)).)).)))))))(((.((..((.......))...)).))).... (-18.44 = -18.22 + -0.22)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 11:00:19 2006