Sequence ID | X_DroMel_CAF1 |
---|---|
Location | 9,323,352 – 9,323,442 |
Length | 90 |
Max. P | 0.993308 |
Location | 9,323,352 – 9,323,442 |
---|---|
Length | 90 |
Sequences | 6 |
Columns | 102 |
Reading direction | forward |
Mean pairwise identity | 70.52 |
Mean single sequence MFE | -26.28 |
Consensus MFE | -10.73 |
Energy contribution | -12.37 |
Covariance contribution | 1.64 |
Combinations/Pair | 1.12 |
Mean z-score | -2.60 |
Structure conservation index | 0.41 |
SVM decision value | 2.39 |
SVM RNA-class probability | 0.993308 |
Prediction | RNA |
Download alignment: ClustalW | MAF
>X_DroMel_CAF1 9323352 90 + 22224390 ----CCCCGGAUCCCAAUU-CG-GAUCCCUUUGCCGCUCUGCUUUACGGCUUCGAUUUCAAUUUUCGGGCCCAAGG--GCAGAUUGGCAAAAAA----AUAA ----....((((((.....-.)-))))).(((((((.((((((((..((((.(((.........)))))))..)))--))))).)))))))...----.... ( -36.20) >DroPse_CAF1 117587 76 + 1 -----CCCUGACC-CUGCCCCC-UGCCCCAUGCUACC--UGCUUUGUGGCUUCGAUUUCAAUUUUCGAGACUUUGGAAGCGGAUC----------------- -----........-((((..((-.(((.((.((....--.))..)).)))(((((.........))))).....))..))))...----------------- ( -17.40) >DroSec_CAF1 104162 90 + 1 ----CCCC-GAUCCCAAUU-CC-GAUCCCUUUGCCGC--UGCUUUACGGCUUCGAUUUCAAUUUUCGGGCCCAAGG--GCAGAUUGGCAAAAA-AAAAAGAA ----....-((((......-..-))))..((((((.(--((((((..((((.(((.........)))))))..)))--))))...))))))..-........ ( -25.70) >DroEre_CAF1 112898 88 + 1 ----CCCC-GAUCCCAAUU-CCGGAUCCCUUUGCCGC--UGCUUUACGGCUUCGAUUUCAAUUUUCGGGCCCAAGG--GCAGAUUGGCAAAAAA----AAAA ----....-(((((.....-..)))))..((((((.(--((((((..((((.(((.........)))))))..)))--))))...))))))...----.... ( -28.70) >DroYak_CAF1 104060 87 + 1 CCCCUCCC-GAUCCCAAUU-CC-GAUCCCUUUGCCGC--UGCUUUACGGCUUCGAUUUCAAUUUUCGGGCCCAAGG--GCAGAUUGGCAAUGAA-------- ........-((((......-..-))))...(((((.(--((((((..((((.(((.........)))))))..)))--))))...)))))....-------- ( -24.70) >DroAna_CAF1 115265 78 + 1 --------------AUAGC-CA-GAGCCUUUUCUCGC--UGCUUUACGGCUUCGAUUUCAAUUUUCGAGCCCAAGG--GCAGAUGGCCAAAAGG----UGGU --------------...((-(.-..(((((((.((((--((((((..((((.(((.........)))))))..)))--)))).)))..))))))----)))) ( -25.00) >consensus ____CCCC_GAUCCCAAUU_CC_GAUCCCUUUGCCGC__UGCUUUACGGCUUCGAUUUCAAUUUUCGGGCCCAAGG__GCAGAUUGGCAAAAAA____A_AA .............................(((((((...(((.....((((.(((.........))))))).......)))...)))))))........... (-10.73 = -12.37 + 1.64)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 11:00:17 2006