Sequence ID | X_DroMel_CAF1 |
---|---|
Location | 9,322,890 – 9,323,009 |
Length | 119 |
Max. P | 0.500000 |
Location | 9,322,890 – 9,323,009 |
---|---|
Length | 119 |
Sequences | 3 |
Columns | 119 |
Reading direction | forward |
Mean pairwise identity | 85.15 |
Mean single sequence MFE | -23.20 |
Consensus MFE | -15.98 |
Energy contribution | -15.77 |
Covariance contribution | -0.21 |
Combinations/Pair | 1.14 |
Mean z-score | -1.86 |
Structure conservation index | 0.69 |
SVM decision value | -0.07 |
SVM RNA-class probability | 0.500000 |
Prediction | OTHER |
Download alignment: ClustalW | MAF
>X_DroMel_CAF1 9322890 119 + 22224390 ACAUCCAAUAUUUUAUAUCAAUGCAAUUUACGUCCACAAAAACAUCGAAUAAAACACUUUAUUUGGAUAAAGAAUAUCGGCAGAACCAUUUGCCUGCAGUAAAGUAUUUUUGCUGAUAA .......(((((((.((((............((........))..((((((((....)))))))))))).))))))).((((((....))))))..((((((((...)))))))).... ( -21.40) >DroEre_CAF1 112444 119 + 1 AAACCUAAUAUGAUAUUUCAAUGUUAUCUACGUGCACAUCAAAAUGAAAUAAAAUACUUUACUUGGAUGAAGAACAUCGGAAGAAUCAUUUGCCUGCAGUAAAGUAUUUUUGCUGAUAA .....((((((((....)).))))))....((.((((((....)))....((((((((((((((((..(((.....((....))....)))..))).)))))))))))))))))).... ( -20.50) >DroYak_CAF1 103557 119 + 1 AAACCUAAUAUUAUAUAUCAUUGCUAUCUACGUCCACGUAAACAUUGAAUAAAAUACUUUACUGGGAUAAGGAACAUCGGAAGAGCCAUUUGCCUGCAGUAAAGUAUUUUUGCUGAUAA ...............(((((..((....((((....))))..........((((((((((((((((....((....((....)).)).....))..)))))))))))))).))))))). ( -27.70) >consensus AAACCUAAUAUUAUAUAUCAAUGCUAUCUACGUCCACAUAAACAUCGAAUAAAAUACUUUACUUGGAUAAAGAACAUCGGAAGAACCAUUUGCCUGCAGUAAAGUAUUUUUGCUGAUAA ...............(((((..((.......(....).............(((((((((((((.((.((((.....((....))....))))))...))))))))))))).))))))). (-15.98 = -15.77 + -0.21)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 11:00:16 2006