Sequence ID | X_DroMel_CAF1 |
---|---|
Location | 9,321,586 – 9,321,684 |
Length | 98 |
Max. P | 0.584035 |
Location | 9,321,586 – 9,321,684 |
---|---|
Length | 98 |
Sequences | 5 |
Columns | 99 |
Reading direction | forward |
Mean pairwise identity | 85.91 |
Mean single sequence MFE | -12.33 |
Consensus MFE | -7.92 |
Energy contribution | -8.16 |
Covariance contribution | 0.24 |
Combinations/Pair | 1.06 |
Mean z-score | -2.05 |
Structure conservation index | 0.64 |
SVM decision value | 0.10 |
SVM RNA-class probability | 0.584035 |
Prediction | RNA |
Download alignment: ClustalW | MAF
>X_DroMel_CAF1 9321586 98 + 22224390 UAUGCCGCACAUAAAUUGAAAUACAUAUUCAAUUGGAAAUGACGAAAAAAAAAAAUCCAACCAAUUUCCCAUUCCCCAA-AUUUGUCGCCUUUUUCCUU ...((.(((....(((((((.......)))))))((((((.......................))))))..........-...))).)).......... ( -9.90) >DroSec_CAF1 102410 95 + 1 UAUGCCGCACAUAAAUUGAAAUAAAUAUUCAAUUGGAAAUAACAAAAAAA---AAACCGACCAAUUUCCCAUUCUCCAA-AUUUGUAGCUUUUUUCCUU ...((..((....(((((((.......)))))))((((((..........---..........))))))..........-...))..)).......... ( -10.05) >DroSim_CAF1 101421 95 + 1 UAUGCCGCACAUAAAUUGAAAUACAUAUUCAAUUGGAAAUAACAAAAAAA---AAACCGACCAAUUUCCCAUUCCCCAA-AUUUGUCGCUUUUUUCCUU ((((.....))))(((((((.......)))))))(((((...........---(((.((((.(((((..........))-))).)))).)))))))).. ( -10.20) >DroEre_CAF1 111264 86 + 1 UAUGCCGCACAUAAAUUGAAAUACAUAUUCAAUUGGAAA--------AAA---AAUCCGACCAAUUUCCCAUUCCCCAA-AUUUGUCGCUGGUUUU-CC ...(((((.....(((((((.......)))))))(((..--------...---..)))(((.(((((..........))-))).))))).)))...-.. ( -12.50) >DroYak_CAF1 102341 87 + 1 UAUGCCGCACAUAAAUUGAAAUACAUAUUCAAUUGGGAA---------AA---AAUCCGACCAAUUUCCCAUUCCCCAAAAUUGGUCGCUUUUUUUUUU ((((.....))))(((((((.......)))))))(((((---------((---((..((((((((((...........))))))))))..))))))))) ( -19.00) >consensus UAUGCCGCACAUAAAUUGAAAUACAUAUUCAAUUGGAAAU_AC_AAAAAA___AAUCCGACCAAUUUCCCAUUCCCCAA_AUUUGUCGCUUUUUUCCUU ...((.((.....(((((((.......)))))))((((((.......................))))))...............)).)).......... ( -7.92 = -8.16 + 0.24)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 11:00:15 2006