Sequence ID | X_DroMel_CAF1 |
---|---|
Location | 9,321,212 – 9,321,304 |
Length | 92 |
Max. P | 0.515530 |
Location | 9,321,212 – 9,321,304 |
---|---|
Length | 92 |
Sequences | 4 |
Columns | 106 |
Reading direction | forward |
Mean pairwise identity | 83.16 |
Mean single sequence MFE | -16.95 |
Consensus MFE | -10.48 |
Energy contribution | -10.47 |
Covariance contribution | -0.00 |
Combinations/Pair | 1.22 |
Mean z-score | -1.73 |
Structure conservation index | 0.62 |
SVM decision value | -0.04 |
SVM RNA-class probability | 0.515530 |
Prediction | RNA |
Download alignment: ClustalW | MAF
>X_DroMel_CAF1 9321212 92 + 22224390 CGCGAAUUGAACG--------AAGUAAAAUGAAUAAAUUCUUCGGGUUACUUAAGAAGUAAUCAAGAAUGUUCAGUAA------UUGAAAAAUACCUCGUUUAAUA .....((((((((--------(.(((...(((((..(((((...(((((((.....))))))).))))))))))....------((....))))).))))))))). ( -21.60) >DroSec_CAF1 102028 92 + 1 CGGGAAUUGUACG--------AAGUAUAAUGAAUGAAUUCUUCGGGUUACUUAAGAAGUAAUCAAGAACGUGCAGUAA------UUGAAAAAUACCUUGUUUAAUA .(((.((((((((--------........((((.(....)))))(((((((.....))))))).....)))))))).(------((....))).)))......... ( -17.70) >DroSim_CAF1 101033 92 + 1 CGAAAAUUGAACG--------AAGUAAAAUGAAUGAAUUCUUCUGGUUACUUAAGAAGUAAUCAAGAACGUGCAGUAA------UUGAAAAAUACCUUGUUUAAUA .....((((((((--------(.(((...((.(((..((((..((((((((.....))))))))))))))).))....------((....))))).))))))))). ( -16.50) >DroEre_CAF1 110866 104 + 1 CGGGAAUUGAACAUAAAUAGAAUGUAAAAUGAAUAAAUUCCUAGGGUUACUUAAGAAGUAAUCAAGAAUGUGAAAU--UGAAAAUUGAAAAAUACCUUGUUUAAAA .(((((((..((((.....((((.............))))....(((((((.....)))))))....))))..)))--)....(((....))).)))......... ( -12.02) >consensus CGGGAAUUGAACG________AAGUAAAAUGAAUAAAUUCUUCGGGUUACUUAAGAAGUAAUCAAGAACGUGCAGUAA______UUGAAAAAUACCUUGUUUAAUA .....((((((((.................(((....)))....(((((((.....))))))).....)))))))).............................. (-10.48 = -10.47 + -0.00)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 11:00:15 2006