Locus 3471

Sequence ID X_DroMel_CAF1
Location 9,317,412 – 9,317,505
Length 93
Max. P 0.984258
window5678

overview

Window 8

Location 9,317,412 – 9,317,505
Length 93
Sequences 4
Columns 99
Reading direction reverse
Mean pairwise identity 80.73
Mean single sequence MFE -29.44
Consensus MFE -23.02
Energy contribution -23.65
Covariance contribution 0.63
Combinations/Pair 1.10
Mean z-score -2.37
Structure conservation index 0.78
SVM decision value 1.97
SVM RNA-class probability 0.984258
Prediction RNA

Download alignment: ClustalW | MAF

>X_DroMel_CAF1 9317412 93 - 22224390
CAUACGGCCGCCGAUCCGCUGCA---GGUCACUGAUGCCGCCCCA---UCGGGCCCACCAUCAUCUUCAUCAUCCUCGCCCAUCGGCGACCGCCAUUCA
....(((.(((((((..((.(.(---((....(((((..((((..---..))))....)))))..........))))))..))))))).)))....... ( -29.14)
>DroSec_CAF1 98281 93 - 1
CACACGGCCGCCGAUCCGCUGCA---GGUCACUGAGGCCGCCCCC---UCGGGCCCACCAUCAUCUUCAUCAUCCUCGCCCAUCGGCGAUCGCCAUUCA
.....((((((((((..((....---((((.....))))((((..---..)))).......................))..)))))))...)))..... ( -30.10)
>DroSim_CAF1 98326 93 - 1
CACACGGCCGCCGAUCCGCUGCA---GGUCACUGAGGCCGCCCCC---UCGGGCCCACCAUCAUCUUCAUCAUCCUCGCCCAUCGGCGACCGCCAUUCA
....(((.(((((((..((....---((((.....))))((((..---..)))).......................))..))))))).)))....... ( -30.80)
>DroYak_CAF1 98312 85 - 1
-----GGCUGCCGAUCCGCUGCCCACUGUCACCGGUGUCGCCCCAUCAUCGGCCCCA---------ACAGCAGCCACGCCCAUCGGCGAACGCCAUCCA
-----((((((((((..(((((.(((((....)))))..(((........)))....---------...))))).......)))))))...)))..... ( -27.70)
>consensus
CACACGGCCGCCGAUCCGCUGCA___GGUCACUGAGGCCGCCCCA___UCGGGCCCACCAUCAUCUUCAUCAUCCUCGCCCAUCGGCGACCGCCAUUCA
.....((((((((((..((.......((((.....))))((((.......)))).......................))..)))))))...)))..... (-23.02 = -23.65 +   0.63)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 11:00:10 2006