Sequence ID | X_DroMel_CAF1 |
---|---|
Location | 9,310,662 – 9,310,784 |
Length | 122 |
Max. P | 0.724247 |
Location | 9,310,662 – 9,310,760 |
---|---|
Length | 98 |
Sequences | 5 |
Columns | 98 |
Reading direction | reverse |
Mean pairwise identity | 96.84 |
Mean single sequence MFE | -22.16 |
Consensus MFE | -19.54 |
Energy contribution | -19.58 |
Covariance contribution | 0.04 |
Combinations/Pair | 1.03 |
Mean z-score | -1.30 |
Structure conservation index | 0.88 |
SVM decision value | 0.13 |
SVM RNA-class probability | 0.596551 |
Prediction | RNA |
Download alignment: ClustalW | MAF
>X_DroMel_CAF1 9310662 98 - 22224390 UUAGAGGCGAGUGGGAUUUUUCCAAAAUGUUGCACAAAGUUCACUUAAUUUGUGUGUGGCUCAUAAAUUCUUUACGAAAUAUUUUCGGUUUGCUUUUG .(((((((((((((((....))).....((..(((((((((.....))))).))))..)).)))..........((((.....))))..))))))))) ( -22.50) >DroSec_CAF1 91577 98 - 1 UUAGAGGAGAGUGGGAUUUUUCCAAAAUGUUGCACAAAGUUCACUUAAUUUGUGUGUGGCUCAUAAAUUCUUUACGAAAUAUUUUCGGUUUGCUUUAG .(((((((((((.(((....))).....((..(((((((((.....))))).))))..))......))))))..((((.....)))).....))))). ( -20.80) >DroSim_CAF1 91558 98 - 1 UUAGAGGCGAGUGGGAUUUUUCCAAAAUGUUGCACAAAGUUCACUUAAUUUGUGUGUGGCUCAUAAAUUCUUUACGAAAUAUUUUCGGUUUGCUUUUG .(((((((((((((((....))).....((..(((((((((.....))))).))))..)).)))..........((((.....))))..))))))))) ( -22.50) >DroEre_CAF1 100489 96 - 1 UUGGAGGCGAGUGGGAUUUUUCCAGAAUGUUGCACAAAGUUCACUUAAUUUGUGUGUGGCUCAUAAAUUCUUUACGAAAUAUUUUCGGUUUGCUUU-- ...(((((((((((((....))).....((..(((((((((.....))))).))))..)).)))..........((((.....))))..)))))))-- ( -21.10) >DroYak_CAF1 91448 98 - 1 UUAGAGGCGAGUGGGAUUUUUCCAAAUUGUUGCACAAAGUUCACUUAAUUUGUGUGCGGCUCAUAAAUUCUUUACGAAAUAUUUUCGGUUUGCUUUUG .(((((((((((((((....))).....(((((((((((((.....))))).)))))))).)))..........((((.....))))..))))))))) ( -23.90) >consensus UUAGAGGCGAGUGGGAUUUUUCCAAAAUGUUGCACAAAGUUCACUUAAUUUGUGUGUGGCUCAUAAAUUCUUUACGAAAUAUUUUCGGUUUGCUUUUG ...(((((((((((((....))).....(((((((((((((.....))))).)))))))).)))..........((((.....))))..))))))).. (-19.54 = -19.58 + 0.04)
Location | 9,310,688 – 9,310,784 |
---|---|
Length | 96 |
Sequences | 5 |
Columns | 96 |
Reading direction | reverse |
Mean pairwise identity | 97.92 |
Mean single sequence MFE | -20.52 |
Consensus MFE | -19.38 |
Energy contribution | -19.42 |
Covariance contribution | 0.04 |
Combinations/Pair | 1.04 |
Mean z-score | -1.28 |
Structure conservation index | 0.94 |
SVM decision value | 0.41 |
SVM RNA-class probability | 0.724247 |
Prediction | RNA |
Download alignment: ClustalW | MAF
>X_DroMel_CAF1 9310688 96 - 22224390 UUAUUAGUUUAUUUGUUUCGGCUUUUAGAGGCGAGUGGGAUUUUUCCAAAAUGUUGCACAAAGUUCACUUAAUUUGUGUGUGGCUCAUAAAUUCUU .........((((((((((........))))))))))(((....))).....((..(((((((((.....))))).))))..))............ ( -21.00) >DroSec_CAF1 91603 96 - 1 UUAUUAGUUUAUUUGUUUCGGCUUUUAGAGGAGAGUGGGAUUUUUCCAAAAUGUUGCACAAAGUUCACUUAAUUUGUGUGUGGCUCAUAAAUUCUU .....(((((((....(((.((((((....)))))).)))............((..(((((((((.....))))).))))..))..)))))))... ( -17.50) >DroSim_CAF1 91584 96 - 1 UUAUUAGUUUAUUUGUUUCGGCUUUUAGAGGCGAGUGGGAUUUUUCCAAAAUGUUGCACAAAGUUCACUUAAUUUGUGUGUGGCUCAUAAAUUCUU .........((((((((((........))))))))))(((....))).....((..(((((((((.....))))).))))..))............ ( -21.00) >DroEre_CAF1 100513 96 - 1 UUAUUAGUUUAUUUGUUUCGGCUUUUGGAGGCGAGUGGGAUUUUUCCAGAAUGUUGCACAAAGUUCACUUAAUUUGUGUGUGGCUCAUAAAUUCUU .........((((((((((........))))))))))(((....)))(((((((..(((((((((.....))))).))))..))......))))). ( -20.70) >DroYak_CAF1 91474 96 - 1 UUAUUAGUUUAUUUGUUUCGGCUUUUAGAGGCGAGUGGGAUUUUUCCAAAUUGUUGCACAAAGUUCACUUAAUUUGUGUGCGGCUCAUAAAUUCUU .........((((((((((........))))))))))(((....))).....(((((((((((((.....))))).))))))))............ ( -22.40) >consensus UUAUUAGUUUAUUUGUUUCGGCUUUUAGAGGCGAGUGGGAUUUUUCCAAAAUGUUGCACAAAGUUCACUUAAUUUGUGUGUGGCUCAUAAAUUCUU .........((((((((((........))))))))))(((....))).....(((((((((((((.....))))).))))))))............ (-19.38 = -19.42 + 0.04)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 11:00:09 2006