Sequence ID | X_DroMel_CAF1 |
---|---|
Location | 1,068,745 – 1,068,837 |
Length | 92 |
Max. P | 0.599591 |
Location | 1,068,745 – 1,068,837 |
---|---|
Length | 92 |
Sequences | 4 |
Columns | 92 |
Reading direction | forward |
Mean pairwise identity | 94.57 |
Mean single sequence MFE | -25.48 |
Consensus MFE | -23.66 |
Energy contribution | -23.73 |
Covariance contribution | 0.06 |
Combinations/Pair | 1.04 |
Mean z-score | -1.43 |
Structure conservation index | 0.93 |
SVM decision value | 0.13 |
SVM RNA-class probability | 0.599591 |
Prediction | RNA |
Download alignment: ClustalW | MAF
>X_DroMel_CAF1 1068745 92 + 22224390 CAACUGGAUAGAUUCCAGGCUAUUGGAAUGCCGCACACGUCGCAGAUUUUGGCAGUUUCUCUCCGAUUUGUGGUUACAAAUUGGUUCGAUUU ...(((((.....)))))((((..(...(((.((....)).)))..)..))))....((...(((((((((....)))))))))...))... ( -25.10) >DroSec_CAF1 1853 92 + 1 CAACUGGAUAGAUUCCAGGCUAUUGAAAUGCCGCACACGUCGCAGAUUUUGGCAGUUUCUCUCCGAUUUGUGGUUACAAAUUGGUUGGAUUA ...(((((.....)))))((((......(((.((....)).))).....))))....(((..(((((((((....)))))))))..)))... ( -27.30) >DroEre_CAF1 9322 92 + 1 GAACUGGAUGGAUUCCAGGCUAUUGAAAUGCCGCACACGUCGCAGAUUUUGGCAGUUUCUCUCCGAUUUGUGAUUACAAAUUGGUUCGAUUU ...(((((.....)))))((((......(((.((....)).))).....))))....((...(((((((((....)))))))))...))... ( -24.70) >DroYak_CAF1 1894 92 + 1 GAACUGGAUGGAUUCCAGGCCAUUGAAAUGCCGCACACGUCGCAGAUUUUGGCAGUUUCUCUCCGAUUUGCGAUUACAAAUUGUUUCGAUUU (..(((((.....)))))..)((((((((.........((((((((((..((.((.....))))))))))))))........)))))))).. ( -24.83) >consensus CAACUGGAUAGAUUCCAGGCUAUUGAAAUGCCGCACACGUCGCAGAUUUUGGCAGUUUCUCUCCGAUUUGUGAUUACAAAUUGGUUCGAUUU ...(((((.....)))))((((......(((.((....)).))).....))))....((...((((((((......))))))))...))... (-23.66 = -23.73 + 0.06)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 09:42:18 2006