Sequence ID | X_DroMel_CAF1 |
---|---|
Location | 9,303,663 – 9,303,755 |
Length | 92 |
Max. P | 0.634489 |
Location | 9,303,663 – 9,303,755 |
---|---|
Length | 92 |
Sequences | 5 |
Columns | 112 |
Reading direction | forward |
Mean pairwise identity | 73.07 |
Mean single sequence MFE | -20.22 |
Consensus MFE | -6.87 |
Energy contribution | -6.27 |
Covariance contribution | -0.60 |
Combinations/Pair | 1.20 |
Mean z-score | -1.75 |
Structure conservation index | 0.34 |
SVM decision value | 0.21 |
SVM RNA-class probability | 0.634489 |
Prediction | RNA |
Download alignment: ClustalW | MAF
>X_DroMel_CAF1 9303663 92 + 22224390 AUGAGGCUGCUGCCAAAAAAACAAAAAAAACGCUGGAAAAUGCGGGAAAGCCAAAUUAGGUAUAAUGUUCGACAA--------------------GCACCAGUGCAAAACAU ....(((....)))................((((((....((((((...(((......)))......)))).)).--------------------...))))))........ ( -18.10) >DroSec_CAF1 85177 106 + 1 AUGAGGCUGCUACCAAAAA------AAAAACGCAGGAAAAUGCGGGAAUGCCAAAUUAGGUAUAAUGUUCGACUAGAAAUUAGCCUGCAGUAGUAGCUCCAGUGAAAAACAU .((..((((((((......------.....(....)....((((((.(((((......)))))....(((.....))).....))))))))))))))..))........... ( -27.40) >DroSim_CAF1 84692 108 + 1 AUGAGGCUGCUGCCAAAAAA----AAAAAACGCAGGAAAAUGCGGGAAAGCCAAAUUAGGUAUAAUGUUCGACUAGAAAAUAGCCUGCAGUAGUAGCUCCAGUGAAAAACAU .((..((((((((.......----......((((......))))((....))....(((((......(((.....)))....)))))..))))))))..))........... ( -26.20) >DroEre_CAF1 92269 85 + 1 AUGAGGCUGCUGCCACAA-------AUAAGCACCGGAAAAUGCGGGAAAUCCAAAUUAGGUUUAAUAUUCGAGCCCA------------------GCUCCAGCGAAAAGC-- ....((.((((.......-------...))))))(((....((.((....))......(((((.......)))))..------------------))))).((.....))-- ( -15.20) >DroYak_CAF1 85068 92 + 1 AUGAGGCUGCUGCC-CAA-------AUAAACACAGGAAAAUGCGGAAAAGUCAAAUUAGAUAUAAUACUCGACUUAAAAAUAG------------CCUGAAGUGAAAAACAU .(.(((((((((((-(..-------.........)).....))))..(((((..((((....))))....))))).....)))------------))).)............ ( -14.20) >consensus AUGAGGCUGCUGCCAAAAA______AAAAACGCAGGAAAAUGCGGGAAAGCCAAAUUAGGUAUAAUGUUCGACUAGAAA_UAG____________GCUCCAGUGAAAAACAU .((((.((((..((....................)).....))))....(((......)))......))))..............................((.....)).. ( -6.87 = -6.27 + -0.60)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 11:00:07 2006