Sequence ID | X_DroMel_CAF1 |
---|---|
Location | 9,300,123 – 9,300,227 |
Length | 104 |
Max. P | 0.725319 |
Location | 9,300,123 – 9,300,227 |
---|---|
Length | 104 |
Sequences | 3 |
Columns | 104 |
Reading direction | forward |
Mean pairwise identity | 93.42 |
Mean single sequence MFE | -22.17 |
Consensus MFE | -22.07 |
Energy contribution | -22.07 |
Covariance contribution | -0.00 |
Combinations/Pair | 1.00 |
Mean z-score | -1.45 |
Structure conservation index | 1.00 |
SVM decision value | 0.41 |
SVM RNA-class probability | 0.725319 |
Prediction | RNA |
Download alignment: ClustalW | MAF
>X_DroMel_CAF1 9300123 104 + 22224390 AAUCCGCCGACAUCCAUAAACCCGUCUUGCCAUUGUUACUCAAUCAAAUUUCCAUUAGGAAAGCCAGGCUAAUAGAGUUUCGUCUGUCUGGCGCUCUGUCUUUC ....((((((((..(..((((.(.....(((((((.....))))....(((((....)))))....))).....).)))).)..)))).))))........... ( -22.40) >DroSec_CAF1 81715 96 + 1 AAUCCGCCGACAUCCAUAAACCCGUCUUGCCAUUGUUACUCAAUCAAAUUUCCAUUAGGAAAGCCAGGCUAAUAGAGUUUCGUCUGUCUGGCGCUC-------- ....((((((((..(..((((.(.....(((((((.....))))....(((((....)))))....))).....).)))).)..)))).))))...-------- ( -22.40) >DroYak_CAF1 81954 95 + 1 AAUCCGCCGACAUCCAUAAACCCGUCUUGCCAUUGUUACUCAAUCAAAUUUCCAUUAGGAAAGCCAGGCUAAUAGAGUUUCGCCUGUCUGGCGCU--------- ....((((((((.....((((.(.....(((((((.....))))....(((((....)))))....))).....).))))....)))).))))..--------- ( -21.70) >consensus AAUCCGCCGACAUCCAUAAACCCGUCUUGCCAUUGUUACUCAAUCAAAUUUCCAUUAGGAAAGCCAGGCUAAUAGAGUUUCGUCUGUCUGGCGCUC________ ....((((((((..(..((((.(.....(((((((.....))))....(((((....)))))....))).....).)))).)..)))).))))........... (-22.07 = -22.07 + -0.00)
Location | 9,300,123 – 9,300,227 |
---|---|
Length | 104 |
Sequences | 3 |
Columns | 104 |
Reading direction | reverse |
Mean pairwise identity | 93.42 |
Mean single sequence MFE | -28.07 |
Consensus MFE | -28.07 |
Energy contribution | -28.07 |
Covariance contribution | -0.00 |
Combinations/Pair | 1.00 |
Mean z-score | -1.38 |
Structure conservation index | 1.00 |
SVM decision value | 0.31 |
SVM RNA-class probability | 0.681713 |
Prediction | RNA |
Download alignment: ClustalW | MAF
>X_DroMel_CAF1 9300123 104 - 22224390 GAAAGACAGAGCGCCAGACAGACGAAACUCUAUUAGCCUGGCUUUCCUAAUGGAAAUUUGAUUGAGUAACAAUGGCAAGACGGGUUUAUGGAUGUCGGCGGAUU ...........((((.((((..((((((((.....(((....(((((....)))))....((((.....))))))).....)))))).))..)))))))).... ( -28.60) >DroSec_CAF1 81715 96 - 1 --------GAGCGCCAGACAGACGAAACUCUAUUAGCCUGGCUUUCCUAAUGGAAAUUUGAUUGAGUAACAAUGGCAAGACGGGUUUAUGGAUGUCGGCGGAUU --------...((((.((((..((((((((.....(((....(((((....)))))....((((.....))))))).....)))))).))..)))))))).... ( -28.60) >DroYak_CAF1 81954 95 - 1 ---------AGCGCCAGACAGGCGAAACUCUAUUAGCCUGGCUUUCCUAAUGGAAAUUUGAUUGAGUAACAAUGGCAAGACGGGUUUAUGGAUGUCGGCGGAUU ---------..((((.((((..((((((((.....(((....(((((....)))))....((((.....))))))).....)))))).))..)))))))).... ( -27.00) >consensus ________GAGCGCCAGACAGACGAAACUCUAUUAGCCUGGCUUUCCUAAUGGAAAUUUGAUUGAGUAACAAUGGCAAGACGGGUUUAUGGAUGUCGGCGGAUU ...........((((.((((..((((((((.....(((....(((((....)))))....((((.....))))))).....)))))).))..)))))))).... (-28.07 = -28.07 + -0.00)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 11:00:07 2006