Sequence ID | X_DroMel_CAF1 |
---|---|
Location | 9,297,666 – 9,297,760 |
Length | 94 |
Max. P | 0.863138 |
Location | 9,297,666 – 9,297,760 |
---|---|
Length | 94 |
Sequences | 4 |
Columns | 100 |
Reading direction | reverse |
Mean pairwise identity | 82.11 |
Mean single sequence MFE | -25.85 |
Consensus MFE | -17.38 |
Energy contribution | -17.25 |
Covariance contribution | -0.12 |
Combinations/Pair | 1.10 |
Mean z-score | -2.06 |
Structure conservation index | 0.67 |
SVM decision value | 0.84 |
SVM RNA-class probability | 0.863138 |
Prediction | RNA |
Download alignment: ClustalW | MAF
>X_DroMel_CAF1 9297666 94 - 22224390 ACAUAU----AUGUAUG--UGCAUACAUACAUAUGGUCGGAUGUAUAGUAAAUCAAGUUGGGGGCGAAAUGCAGCUGACCAGAUUUACAGGCGUGUGCAC ...(((----(((((((--(....)))))))))))(.((.((((...(((((((..((..(..((.....))..)..))..)))))))..)))).))).. ( -29.40) >DroSec_CAF1 79337 82 - 1 ACAUAU----AUGU--------------ACAUAUGGUCGGAUGUAUAGUAAAUCAAGUUGGGGGCGAAACGCAGCUGACCAGAUUUACAGGCGUGUGGAC .(((((----.(((--------------((((........)))))))(((((((..((..(..(((...)))..)..))..)))))))....)))))... ( -23.60) >DroSim_CAF1 77395 82 - 1 ACAUAU----AUGU--------------ACAUAUGGUCGGAUGUAUAGUAAAUCAAGUUGGGGGCGAAACGCAGCUGACCAGAUUUACAGGCGUGUGCAC .(((((----.(((--------------((((........)))))))(((((((..((..(..(((...)))..)..))..)))))))....)))))... ( -22.70) >DroEre_CAF1 86217 96 - 1 AAGUAUGGGC----GUAUACUCGCACAUACAUAUGGUCGGAUGUAUAGUAAAUCAAGUUGGGGCCGAAACGCAGCUGACCAGAUUUACAGACGUGUGCAC ..(((((.((----(......))).))))).....(.((.((((...(((((((..((..(.((......))..)..))..)))))))..)))).))).. ( -27.70) >consensus ACAUAU____AUGU______________ACAUAUGGUCGGAUGUAUAGUAAAUCAAGUUGGGGGCGAAACGCAGCUGACCAGAUUUACAGGCGUGUGCAC ...................................((((.((((...(((((((..((..(..(((...)))..)..))..)))))))..)))).)).)) (-17.38 = -17.25 + -0.12)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 11:00:04 2006