Sequence ID | X_DroMel_CAF1 |
---|---|
Location | 9,287,668 – 9,287,760 |
Length | 92 |
Max. P | 0.927441 |
Location | 9,287,668 – 9,287,760 |
---|---|
Length | 92 |
Sequences | 3 |
Columns | 97 |
Reading direction | forward |
Mean pairwise identity | 73.48 |
Mean single sequence MFE | -18.53 |
Consensus MFE | -14.20 |
Energy contribution | -14.54 |
Covariance contribution | 0.33 |
Combinations/Pair | 1.00 |
Mean z-score | -1.36 |
Structure conservation index | 0.77 |
SVM decision value | 1.18 |
SVM RNA-class probability | 0.927441 |
Prediction | RNA |
Download alignment: ClustalW | MAF
>X_DroMel_CAF1 9287668 92 + 22224390 CGGGUUUCCCAAGGAUGUUUGAGUUGUUAAGCUGCUUUGGGACACAAAG-----CUCCCCCUUCACCCACACAACCAUCUCCCACCUCCCACCUCCC .(((........(((((.(((((((....))))((((((.....)))))-----)................))).))))).......)))....... ( -20.76) >DroSec_CAF1 69821 90 + 1 CGGGUUUCCCAAGGAUGUUUGAGUUGUUAAGCUGCUUUGGGACCCACAGUCGUCCUUCCCCAUCACCCUCACCACCA-------CCUCCCACCUCCC .(((..((((((((..((((((....))))))..)))))))))))................................-------............. ( -19.50) >DroEre_CAF1 76267 76 + 1 -GGGCUGCCCAAGGAUGUUUGAGUUGUUAAGCUGCUUUGGGACACACAA-----CACUCCCCCCACCACCACCAACA---------------CCCCC -(((.(((((((((..((((((....))))))..))))))).)).....-----.......))).............---------------..... ( -15.32) >consensus CGGGUUUCCCAAGGAUGUUUGAGUUGUUAAGCUGCUUUGGGACACACAG_____CUCCCCCAUCACCCACACCACCA_______CCUCCCACCUCCC .(((..((((((((..((((((....))))))..))))))))................))).................................... (-14.20 = -14.54 + 0.33)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 11:00:02 2006