Sequence ID | X_DroMel_CAF1 |
---|---|
Location | 9,281,477 – 9,281,576 |
Length | 99 |
Max. P | 0.908240 |
Location | 9,281,477 – 9,281,576 |
---|---|
Length | 99 |
Sequences | 6 |
Columns | 108 |
Reading direction | forward |
Mean pairwise identity | 76.01 |
Mean single sequence MFE | -14.64 |
Consensus MFE | -9.12 |
Energy contribution | -9.32 |
Covariance contribution | 0.20 |
Combinations/Pair | 1.27 |
Mean z-score | -1.77 |
Structure conservation index | 0.62 |
SVM decision value | 1.06 |
SVM RNA-class probability | 0.908240 |
Prediction | RNA |
Download alignment: ClustalW | MAF
>X_DroMel_CAF1 9281477 99 + 22224390 ---CAUUCAAAGUUUAGAAAUUAUAU------AAAUAAUAUACACCAUCAUAUCUAAUACUUAUGAUCAUUUAGAGGAAAUUCAAAUUUUACUGCCCACUCGGGCAAA ---.....(((((((.(((..(((((------.....)))))..((.(((((.........)))))((.....))))...))))))))))..(((((....))))).. ( -15.10) >DroSec_CAF1 63755 99 + 1 ---CAUUCAAAGUUUAGAAAUUAUAU------AAAUAAUAUACACCAUCAUAUUUAAUACUUUUGAUCACUUAGAGGAAAAUCAAAUUUUACUGCCCACUCGGGCAAA ---.....(((((((.((...(((((------.....))))).................(((((((....)))))))....)))))))))..(((((....))))).. ( -14.30) >DroSim_CAF1 61245 99 + 1 ---CAUUCAAAGUUUAGAAAUUAUAU------AAAUAAUGUACACCAUCAUAUUUAAUACUUUUGAUCAUUUAGAGGAAAUUCAAAUUUUACUGCCCACUCGGGCAAA ---.....(((((((.(((......(------(((((.((........))))))))...(((((((....)))))))...))))))))))..(((((....))))).. ( -17.50) >DroEre_CAF1 70395 108 + 1 UGUCAUUCCAAGUUUAGAAUUAAUAUACUCGUAAAUAAUAAAUACCAACAUUUUUAAUACUUUUGAUCAUUUUGAAGAAAUUCAAAUUUUACAGCCCACUCGGGCAAA .((((....((((((((((................................)))))).)))).))))...((((((....)))))).......((((....))))... ( -15.15) >DroWil_CAF1 69123 83 + 1 ---AUGACGAAUUU---CAAUUAUAU------AUUUAAU--------UCGUAUUCAUUGCUUUUAG-----CAAAAGAACUACAACUUUAACUGCUCAUCCUAGCCAA ---...(((((((.---.(((.....------))).)))--------)))).......(((...((-----((((((........))))...))))......)))... ( -9.00) >DroYak_CAF1 62511 99 + 1 ---CAUUCAAAGAUUAGAAUUUAUAC------AAAUAAUAAAUACCAUCAUAUUUAAUGCUUUUGAUCAUUUAGAAGAUAUACAAAUUUUACUGCCCGCUCGGGCAAA ---...........((((((((....------......((((((......))))))...(((((((....)))))))......)))))))).(((((....))))).. ( -16.80) >consensus ___CAUUCAAAGUUUAGAAAUUAUAU______AAAUAAUAUACACCAUCAUAUUUAAUACUUUUGAUCAUUUAGAAGAAAUUCAAAUUUUACUGCCCACUCGGGCAAA ...........................................................(((((((....)))))))................((((....))))... ( -9.12 = -9.32 + 0.20)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 11:00:00 2006