Locus 3461

Sequence ID X_DroMel_CAF1
Location 9,278,586 – 9,278,681
Length 95
Max. P 0.950223
window5666

overview

Window 6

Location 9,278,586 – 9,278,681
Length 95
Sequences 5
Columns 97
Reading direction forward
Mean pairwise identity 91.44
Mean single sequence MFE -24.54
Consensus MFE -20.62
Energy contribution -20.82
Covariance contribution 0.20
Combinations/Pair 1.17
Mean z-score -1.81
Structure conservation index 0.84
SVM decision value 1.40
SVM RNA-class probability 0.950223
Prediction RNA

Download alignment: ClustalW | MAF

>X_DroMel_CAF1 9278586 95 + 22224390
UAUAUGCGCUGAGGAGAGAUAAAAUC--CGUUUUUAAGGGUAUUCCUAAUUUCCAUAGCAUACUUUCCUGCGCUGCUAAGCUGGAAAAGCAGACAAA
....(((((((.(((((......(((--(........))))........))))).))))....(((((.((........)).))))).)))...... ( -24.54)
>DroSec_CAF1 61020 95 + 1
UAUAUGCGCUGAGGAGAGAUAAAAUC--CGUUUUUAAGGGUAUUCCUAAUUUCCAUAGCAUACUUUCCAGCGCUGCUAAGCUGGGAAAGCAGACAAA
....(((((((.(((((......(((--(........))))........))))).))))....((((((((........)))))))).)))...... ( -28.64)
>DroSim_CAF1 58374 95 + 1
UAUAUGCGCUGAGGAGAGAUAAAAUC--CGUUUUUAAGGGUAUUCCUAAUUUCCAUAGCAUACUUUCCUGCGCUGCUAAGCUGGGAAAGCAGACAAA
....(((((((.(((((......(((--(........))))........))))).))))....(((((((.(((....)))))))))))))...... ( -26.34)
>DroEre_CAF1 67471 97 + 1
AAUAUGCGCUAAAGAGAGAUAAGAACAAUUUUUUUAAGGGUAUUCCUAAUUUCCAUAGCAUAGUUUCCUGCGCUGCCAAGCUGGGAAAGCAGACAAA
....(((((((..((((..((((((.....)))))).(((....)))..))))..))))....(((((((.(((....)))))))))))))...... ( -22.00)
>DroYak_CAF1 59515 95 + 1
AAUAUGCGUUGCAGCAAGAUAAAAUC--CUGUUUUAAGGGUAUUCCUAAUUUCCAUAGCAUACUUUCCUGCGCUGCUAAGCUGGGGAAGCAGACAAA
..(((((((....))........(((--((......)))))................)))))((((((((.(((....)))))))))))........ ( -21.20)
>consensus
UAUAUGCGCUGAGGAGAGAUAAAAUC__CGUUUUUAAGGGUAUUCCUAAUUUCCAUAGCAUACUUUCCUGCGCUGCUAAGCUGGGAAAGCAGACAAA
....(((((((.(((((..(((((.......))))).(((....)))..))))).))))....(((((((.(((....)))))))))))))...... (-20.62 = -20.82 +   0.20)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 10:59:59 2006