Sequence ID | X_DroMel_CAF1 |
---|---|
Location | 9,274,627 – 9,274,725 |
Length | 98 |
Max. P | 0.640789 |
Location | 9,274,627 – 9,274,725 |
---|---|
Length | 98 |
Sequences | 4 |
Columns | 114 |
Reading direction | forward |
Mean pairwise identity | 86.24 |
Mean single sequence MFE | -29.98 |
Consensus MFE | -21.73 |
Energy contribution | -22.60 |
Covariance contribution | 0.87 |
Combinations/Pair | 1.04 |
Mean z-score | -1.62 |
Structure conservation index | 0.72 |
SVM decision value | 0.22 |
SVM RNA-class probability | 0.640789 |
Prediction | RNA |
Download alignment: ClustalW | MAF
>X_DroMel_CAF1 9274627 98 + 22224390 CA-------GUGUUCAGUAAUAAAGUGAAGCGGCCAUUUCCCGGUAACAGGUCAAAGGUGAGCGACAGAGAGGGAAAGCCGGGAAAGCGGCAAUG---------GCUGGCAAAG ..-------((.((((.(.....).)))).((((((((((((.......(.(((....))).)........))))))((((......))))..))---------)))))).... ( -28.56) >DroSec_CAF1 57153 98 + 1 CA-------GUGUUCAGUAAUAAAGUGAAGCGGCCAUUUCCCGGUAACAGGUCAAAGGUGAGCGACAGAGAGGGAAAGCCGGGAAAGCUGCGAUG---------GCUGGGAAAG ((-------((.((((.(.....).))))(((((..(((((((((....(.(((....))).)..(......)....))))))))))))))....---------))))...... ( -28.90) >DroEre_CAF1 63415 107 + 1 CA-------GUGUUCAGUAAUAAAGUGAAGCGGCCAUUUCCCGUUAACAGGUCAAAGGUGAGCGACAGAGAGGGAUAGCCGGGAAAGCCGGGAUAGCUGGGAAAGCUGGGAAAG ((-------((.((((((............((((....((((.......(.(((....))).)........))))..))))((....))......))))))...))))...... ( -26.96) >DroYak_CAF1 54422 114 + 1 CAGUGUUCAGUGUUCAGUAAUAAAGUGAAGCGGCCAUUUCCCGGUAACAGGUCAAAGGUGAGCGACGGCGAGGGAAAGCCGGGAAAGCUGGGAUAGCCGGGAUAGCUGGGAAAG ((((((((....((((.(.....).)))).((((....(((((((....(.(((....))).)..((((........)))).....)))))))..))))))))).)))...... ( -35.50) >consensus CA_______GUGUUCAGUAAUAAAGUGAAGCGGCCAUUUCCCGGUAACAGGUCAAAGGUGAGCGACAGAGAGGGAAAGCCGGGAAAGCUGCGAUA_________GCUGGGAAAG .............(((((...........(((((..(((((((((....(.(((....))).)..(.....).....)))))))))))))).............)))))..... (-21.73 = -22.60 + 0.87)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 10:59:55 2006