Sequence ID | X_DroMel_CAF1 |
---|---|
Location | 9,263,342 – 9,263,444 |
Length | 102 |
Max. P | 0.870059 |
Location | 9,263,342 – 9,263,444 |
---|---|
Length | 102 |
Sequences | 5 |
Columns | 107 |
Reading direction | forward |
Mean pairwise identity | 69.67 |
Mean single sequence MFE | -16.91 |
Consensus MFE | -4.46 |
Energy contribution | -5.06 |
Covariance contribution | 0.60 |
Combinations/Pair | 1.00 |
Mean z-score | -2.02 |
Structure conservation index | 0.26 |
SVM decision value | 0.87 |
SVM RNA-class probability | 0.870059 |
Prediction | RNA |
Download alignment: ClustalW | MAF
>X_DroMel_CAF1 9263342 102 + 22224390 UCACACUUUCAACAUUUCGUUGCUCUGCUCUCUGCUUCACCUUUUUUAAUCCCCAGUUUACUGCUAAUCUGAUAA-----GGUGAAAGUGCAUUUCUUUAUUAAAUU ....................(((.((((.....))((((((((.((.......(((....))).......)).))-----)))))))).)))............... ( -16.84) >DroSec_CAF1 46518 85 + 1 ----------------UUAUAUUUCUGCUCUCUGCUUCACCUU-UUUAAUACUCAGUUUACUGCGAAUCUGAUAA-----GGUGAAAGUGCAUUUCUUUAUUAAAUU ----------------.........(((.((....((((((((-.(((((.(.(((....))).).)).))).))-----)))))))).)))............... ( -15.80) >DroSim_CAF1 45834 85 + 1 ----------------UUAUAUUUCUGCUCUCUGCUUCACCUU-UUUAAUCCCCAGUUUACUGCUAAUCUGAUAA-----GGUGAAAGUGCAUUUCUUUAUUAAAUU ----------------.........(((.((....((((((((-.(((.....(((....)))......))).))-----)))))))).)))............... ( -14.90) >DroEre_CAF1 51174 79 + 1 UGGUACUAU----------------------CUGCUGCAGCUU-UCUAAGCCGCAGUUUACUGCUAAUCUGAUAC-----GGUGAAGGUGCAUUGCUUUAUUAAAUU ..(((((..----------------------..(((((.(((.-....))).)))))((((((.((......)))-----))))).)))))................ ( -18.20) >DroYak_CAF1 43552 103 + 1 UCAUACUUUC-ACAUUACGA--UGCUUGUCUCAGCUUCACCUG-CAUAAUUCCCAGCUUACUGCUGAUCUGAUCCGAUAAGGGGAAAAUGCAUUUCUUUAUUAAAUU ..........-.......((--.(((......))).))...((-(((..((((((((.....))).(((......)))..)))))..)))))............... ( -18.80) >consensus U___ACU_U_______UCAU__UUCUGCUCUCUGCUUCACCUU_UUUAAUCCCCAGUUUACUGCUAAUCUGAUAA_____GGUGAAAGUGCAUUUCUUUAUUAAAUU .................................((((((((............(((....)))(......).........))))))...))................ ( -4.46 = -5.06 + 0.60)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 10:59:53 2006