Sequence ID | X_DroMel_CAF1 |
---|---|
Location | 9,262,200 – 9,262,299 |
Length | 99 |
Max. P | 0.864236 |
Location | 9,262,200 – 9,262,299 |
---|---|
Length | 99 |
Sequences | 4 |
Columns | 112 |
Reading direction | reverse |
Mean pairwise identity | 83.96 |
Mean single sequence MFE | -35.77 |
Consensus MFE | -26.15 |
Energy contribution | -26.15 |
Covariance contribution | 0.00 |
Combinations/Pair | 1.15 |
Mean z-score | -2.01 |
Structure conservation index | 0.73 |
SVM decision value | 0.84 |
SVM RNA-class probability | 0.864236 |
Prediction | RNA |
Download alignment: ClustalW | MAF
>X_DroMel_CAF1 9262200 99 - 22224390 AACCGAAGUGAAGUGGCUGCCAAGUGGAAAAGUGGAGCGCUGCGUCGGUGGAUAUAGCAUUUCCAUUGCCCAUUCC--CUUACCAUCCCUUUCAUUUCUCG----------- ....(((((((((.((.((..(((.((((.(((((((.((((..((....))..))))..))))))).....))))--)))..)).)).)))))))))...----------- ( -31.10) >DroSec_CAF1 45446 103 - 1 AACCGAAGUGAAGUGGCUGCCAAGUGGAAAAGUGGAGCGCUGCGACGAUGGAUGUAGCAUUUCCAUUGCCCAUUGCCCAUUCCCUUCCCUUCCACUUCGCGCG--------- .......(((((((((..(..(((.(((...((((.(((.((.(.(((((((.........))))))).))).)))))))))))))..)..)))))))))...--------- ( -37.50) >DroSim_CAF1 44745 103 - 1 AACCGAAGUGAAGUGGCUGCCAAGUGGAAAAGUGGAGCGCUGCGGCGAUGGAUGUAGCAUUUCCAUUGCCCAUUGCCCAUUCCCUUCCCUUCAAUUUCGCGCG--------- ...((((((((((.((.....(((.(((...((((.(((.((.(((((((((.........))))))))))).))))))))))))))))))).))))))....--------- ( -38.40) >DroEre_CAF1 50033 107 - 1 AACCGAGAUGAAGUGACUGCCAAGUGGAAAAGUGGAGCGCUGCGGCGGUGGAUAUAGCAUUUCCAUUGCC-AUUGC-CAUUGCCAUCCCUUCCAUCUCGU---AAAAAGCAA ...(((((((.((((.((.(((..(....)..)))))))))..((((((((.....(((.......))).-....)-)))))))........))))))).---......... ( -36.10) >consensus AACCGAAGUGAAGUGGCUGCCAAGUGGAAAAGUGGAGCGCUGCGGCGAUGGAUAUAGCAUUUCCAUUGCCCAUUGC_CAUUCCCAUCCCUUCCAUUUCGCG___________ ...(((((((.((((.((.(((..(....)..)))))))))..(((((((((.........)))))))))......................)))))))............. (-26.15 = -26.15 + 0.00)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 10:59:52 2006