Sequence ID | X_DroMel_CAF1 |
---|---|
Location | 9,257,424 – 9,257,523 |
Length | 99 |
Max. P | 0.589790 |
Location | 9,257,424 – 9,257,523 |
---|---|
Length | 99 |
Sequences | 5 |
Columns | 101 |
Reading direction | forward |
Mean pairwise identity | 91.94 |
Mean single sequence MFE | -32.20 |
Consensus MFE | -27.16 |
Energy contribution | -27.96 |
Covariance contribution | 0.80 |
Combinations/Pair | 1.00 |
Mean z-score | -1.29 |
Structure conservation index | 0.84 |
SVM decision value | 0.11 |
SVM RNA-class probability | 0.589790 |
Prediction | RNA |
Download alignment: ClustalW | MAF
>X_DroMel_CAF1 9257424 99 + 22224390 AAGAAAUGGCGAUGAUGGCGGCUGCGGCGGGAA--AAACAGACCAAAAGGAAUGGCCGGGAAAUUGCCAACGGUGUCUGCAGUUUCAUGACUCGCCGGCUU (((...(((((((.((((.(((((((((.....--...((..((....))..))((((((......))..))))).)))))))))))).).)))))).))) ( -31.50) >DroSec_CAF1 40626 98 + 1 AAGAAAUGGCGACGAUGGCGGCUGCGGCG-GAU--AAACAGGCCAAAAGGAAUGGCCGGGAAAUUGCCAACGGUGUCUGCAGUUUCAUGACUCGCCGGCUU (((...((((((..((((.((((((((((-...--.....(((((.......))))).((......)).....)).))))))))))))...)))))).))) ( -32.20) >DroSim_CAF1 39906 98 + 1 AAGAAAUGGCGACGAUGGCGGCUGCGGCG-GAU--AAACAGGCCAAAAGGAAUGGCCGGGAAAUUGCCAACGGUGUCUGCAGUUUCAUGACUCGCCGGCUU (((...((((((..((((.((((((((((-...--.....(((((.......))))).((......)).....)).))))))))))))...)))))).))) ( -32.20) >DroEre_CAF1 45225 90 + 1 AAGAAAUGGCGACGAUGGCGGCUGCGGCG-GAA--AAACAGGCCAAAUGGAAUGGCCAGGA--------ACGAUGGCUGCAGUUUCAUGACUCGGCGGCUU (((...((.(((..((((.((((((((((-...--...).(((((.......)))))....--------......)))))))))))))...))).)).))) ( -29.30) >DroYak_CAF1 37277 100 + 1 AAGAAAUGGCGACGAUGGCGGCUGCGGCG-GAAAAAAACAGGCCAAAAGGAAUGGCCGGGAAAUUGCCAACGGUGGCUGCAGUUUCAUGACUCGCCGGCUU (((...((((((..((((.(((((((((.-..........(((((.......))))).((......)).......)))))))))))))...)))))).))) ( -35.80) >consensus AAGAAAUGGCGACGAUGGCGGCUGCGGCG_GAA__AAACAGGCCAAAAGGAAUGGCCGGGAAAUUGCCAACGGUGUCUGCAGUUUCAUGACUCGCCGGCUU (((...((((((..((((.(((((((((............(((((.......))))).((......))......).))))))))))))...)))))).))) (-27.16 = -27.96 + 0.80)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 10:59:51 2006