Sequence ID | X_DroMel_CAF1 |
---|---|
Location | 9,247,551 – 9,247,643 |
Length | 92 |
Max. P | 0.960451 |
Location | 9,247,551 – 9,247,643 |
---|---|
Length | 92 |
Sequences | 4 |
Columns | 108 |
Reading direction | reverse |
Mean pairwise identity | 70.03 |
Mean single sequence MFE | -23.05 |
Consensus MFE | -16.30 |
Energy contribution | -18.18 |
Covariance contribution | 1.88 |
Combinations/Pair | 1.06 |
Mean z-score | -1.58 |
Structure conservation index | 0.71 |
SVM decision value | 1.51 |
SVM RNA-class probability | 0.960451 |
Prediction | RNA |
Download alignment: ClustalW | MAF
>X_DroMel_CAF1 9247551 92 - 22224390 UUUGAAGCGCUUUCCUUCGCUUUUCCAGGGACAUUCCCGCACCCCAACCAC-------------ACCUCAC--CGCCCCCCUGGGGGGCAUUCCGCU-UUGCAUGCCA ...((((((........))))))....(((.....)))(((..........-------------.......--.((((((...)))))).....((.-..)).))).. ( -24.70) >DroSec_CAF1 30169 90 - 1 UUUGAAGCGCUUUCCUCGGCUUUUCCAGGGACAUUCCCGCACCCACACCUC-------------ACCUCAC--CGCCCCCU--GGGGGCAUUCCGCU-UUGCAUUCCA ...(((((((.......((.....)).(((.....)))))...........-------------.......--.(((((..--.))))).....)))-))........ ( -22.60) >DroEre_CAF1 35601 103 - 1 UUUGAAGCGCUUUCCUCCGCUUUUCCAGGGACAUUCCCGCAUCCCCAUCCCCCAUAUCCCAACCCCCGCAC--CGCCCCCU--GGGGGCAUUCCGCU-UUGCAUGCCA ...((((((........))))))....(((.....)))((((.....................(((((...--.......)--))))(((.......-.))))))).. ( -22.30) >DroAna_CAF1 36504 85 - 1 AGGGA--CUCCCUCCCCCUCAAUGCCAG-GACAU-----CAUUCCAGUCCC-------------GUUUUCUCUCGCCCCUU--GGGGGCGUUCCGCUCUUGCAUGCCA .((((--.....)))).....((((..(-(((..-----.......)))).-------------.........((((((..--.))))))..........)))).... ( -22.60) >consensus UUUGAAGCGCUUUCCUCCGCUUUUCCAGGGACAUUCCCGCACCCCAACCCC_____________ACCUCAC__CGCCCCCU__GGGGGCAUUCCGCU_UUGCAUGCCA ...((((((........))))))....(((.....)))....................................((((((...)))))).....((....))...... (-16.30 = -18.18 + 1.88)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 10:59:48 2006