Sequence ID | X_DroMel_CAF1 |
---|---|
Location | 9,246,218 – 9,246,320 |
Length | 102 |
Max. P | 0.661470 |
Location | 9,246,218 – 9,246,320 |
---|---|
Length | 102 |
Sequences | 5 |
Columns | 110 |
Reading direction | reverse |
Mean pairwise identity | 77.39 |
Mean single sequence MFE | -33.06 |
Consensus MFE | -16.64 |
Energy contribution | -18.56 |
Covariance contribution | 1.92 |
Combinations/Pair | 1.17 |
Mean z-score | -1.89 |
Structure conservation index | 0.50 |
SVM decision value | 0.27 |
SVM RNA-class probability | 0.661470 |
Prediction | RNA |
Download alignment: ClustalW | MAF
>X_DroMel_CAF1 9246218 102 - 22224390 CCGCCGUAUGGCCGUCUCUUUCGCUUUCU--------CUGUGUGUGAUGGCGAGACAAAGUAAACUUUGGCGCGCAGACACGCGUAAUUAAAUGCAACAACAGAGCCGAG ..(((....)))........(((....((--------((((((((..(((((...(((((....))))).))).)).))))((((......))))....)))))).))). ( -30.50) >DroGri_CAF1 32751 90 - 1 ------------UGUCAGUGUGUGUGUGU--------GUGUAUGUCAUGGCGAGUUAAAGUAAACUUCGCUGUGCAGACACGCGUAAUUAAAUGCAACAACAGCAACGAG ------------..((..(((...(((((--------((((.((.(((((((((((......))).)))))))))).))))))(((......))).)))...)))..)). ( -27.90) >DroSec_CAF1 28832 101 - 1 CCGCC-UAUGGCCGUGUCUUUCGCUUUCU--------CUGUGUGUGAUGGCGAGACAAAGUAAACUUUGGCGCGCUGACACGCGUAAUUAAAUGCAACAACAGAGCCGAG .....-..((((.(((.....)))....(--------(((((((((.(((((...(((((....)))))...))))).)))))(((......)))....))))))))).. ( -30.80) >DroEre_CAF1 34296 101 - 1 CCGCC-UAUGGCCGUCUCUUUCGCUUUCU--------CUGUGUGUGUUGGCGAGACAAAGUAAACUUUGGCGCGCAGACACGCGUAAUUAAAUGCAACAACAGAGGCGAG ..(((-...)))........((((...((--------(((((((((((.(((...(((((....)))))...))).)))))))(((......)))....)))))))))). ( -35.40) >DroWil_CAF1 29361 105 - 1 CAGUC-UGUC----UCUCUCUCGGUUUUCCUGUGUGUUUGUGUGCCAUGGCGAGACAAAGUAAACUUUAGCGCGCAGACACGCGUAAUUAAAUGCAACAACCGAGGAGAG .....-...(----((((.(((((((.....((((((((((((((...(......)((((....)))).))))))))))))))(((......)))...)))))))))))) ( -40.70) >consensus CCGCC_UAUGGCCGUCUCUUUCGCUUUCU________CUGUGUGUGAUGGCGAGACAAAGUAAACUUUGGCGCGCAGACACGCGUAAUUAAAUGCAACAACAGAGCCGAG ............((((((.....................((((((....(((...(((((....)))))...)))..))))))(((......))).......)))))).. (-16.64 = -18.56 + 1.92)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 10:59:48 2006