Sequence ID | X_DroMel_CAF1 |
---|---|
Location | 9,243,787 – 9,243,901 |
Length | 114 |
Max. P | 0.571198 |
Location | 9,243,787 – 9,243,901 |
---|---|
Length | 114 |
Sequences | 4 |
Columns | 114 |
Reading direction | forward |
Mean pairwise identity | 93.27 |
Mean single sequence MFE | -23.95 |
Consensus MFE | -18.47 |
Energy contribution | -19.54 |
Covariance contribution | 1.06 |
Combinations/Pair | 1.11 |
Mean z-score | -1.88 |
Structure conservation index | 0.77 |
SVM decision value | 0.08 |
SVM RNA-class probability | 0.571198 |
Prediction | RNA |
Download alignment: ClustalW | MAF
>X_DroMel_CAF1 9243787 114 + 22224390 AAAUUUCAUUUUGCUUGAACCUUCAUUUCAUUUGUGCCCGCAUUUGUCGGGCAUUUUUAAGCGAGUCUCUGGCCUUUUCACUCCUCCUCGCUUUCCGCGAAAACCCCUCAUCAA ........((((((...................((((((((....).)))))))....(((((((.....((..........))..)))))))...))))))............ ( -24.30) >DroSec_CAF1 26462 113 + 1 AAAUUUCAUUUUGCUUGAACCUUCAUUUCAUUUGUGCCCGCAUUUGUCGGGCAUUUUUAAGCGAGUCUCCGGCCU-UCCACUCCGCCCGGCAUUCCGCGAAAACCCCUCAUCAA ...((((.....(((((((..............((((((((....).))))))).)))))))((((..((((.(.-........).)))).))))...))))............ ( -24.66) >DroEre_CAF1 31941 114 + 1 AAAUUUCAUUUUGCUUGAACCUUCAUUUCAUUUGUGCCCGCAUUUGUCGGGUAUUUUUAAGCGAGGCUCUGGCCUUUCCACUCCGCCCGGUUUUCCGCGAAAACCCCUCAUCAA ............(((((((..............((((((((....).))))))).)))))))((((....(((...........))).(((((((...)))))))))))..... ( -28.06) >DroYak_CAF1 27561 114 + 1 AAAUUUCAUUUAGCUUGAACCUUCAUUUCAUUUGUGCCCGCAUUUGUCGGGAAUUUUUAAGCGAGUCUCUGGCCCUUUCACUUCGCCCCACUUUCCGCGAAAACCCCUCAUCAA ...((((.....(((((((..(((....((..(((....)))..))....)))..)))))))((((....(((...........)))..)))).....))))............ ( -18.80) >consensus AAAUUUCAUUUUGCUUGAACCUUCAUUUCAUUUGUGCCCGCAUUUGUCGGGCAUUUUUAAGCGAGUCUCUGGCCUUUCCACUCCGCCCCGCUUUCCGCGAAAACCCCUCAUCAA ...((((.....(((((((..............((((((((....).))))))).)))))))((((.((.(((...........))).)).))))...))))............ (-18.47 = -19.54 + 1.06)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 10:59:47 2006