Sequence ID | X_DroMel_CAF1 |
---|---|
Location | 1,064,878 – 1,064,977 |
Length | 99 |
Max. P | 0.996096 |
Location | 1,064,878 – 1,064,977 |
---|---|
Length | 99 |
Sequences | 3 |
Columns | 108 |
Reading direction | forward |
Mean pairwise identity | 81.93 |
Mean single sequence MFE | -23.16 |
Consensus MFE | -16.06 |
Energy contribution | -18.51 |
Covariance contribution | 2.45 |
Combinations/Pair | 1.04 |
Mean z-score | -3.22 |
Structure conservation index | 0.69 |
SVM decision value | 2.23 |
SVM RNA-class probability | 0.990702 |
Prediction | RNA |
Download alignment: ClustalW | MAF
>X_DroMel_CAF1 1064878 99 + 22224390 AUACAAUGUGUUCACUACCAUUACCAUU-----ACAUUCAAAUGAGUCCUCUAAUAGGAGGAUUCUCUCAAUUUUUUCAUGGUAAUAUUUGUAUGUACACCAA----U .......((((.((.(((.((((((((.-----..........(((((((((....))))))))).............))))))))....))))).))))...----. ( -24.25) >DroSec_CAF1 15917 105 + 1 AUACAAUGUGUUCCCUA---UUACCAUCAUGCAACAUUCGAAUGAGUCCUCUAAAAUCAGGAUUCACUCGAUUUUUCGAUGGCAAUAUAUGUAUGCACACCAAUGCAU ......(((((....((---((.(((((.........((((.((((((((........)))))))).))))......))))).)))).......)))))......... ( -25.36) >DroSim_CAF1 14816 105 + 1 AUACAAUGUGUUCCCUA---UUACCAUCAUGCAACAUUCGAAUGAGUCCUCUAAAAGGAAUCUUCACUCGAUUUUCCGAUGGCAAUAUAUGUAUGCACACCAAUGCAU ......(((((....((---((.(((((.........((((.((((((((.....))))...)))).))))......))))).)))).......)))))......... ( -19.86) >consensus AUACAAUGUGUUCCCUA___UUACCAUCAUGCAACAUUCGAAUGAGUCCUCUAAAAGGAGGAUUCACUCGAUUUUUCGAUGGCAAUAUAUGUAUGCACACCAAUGCAU ......(((((............(((((.........((((.(((((((((......))))))))).))))......)))))............)))))......... (-16.06 = -18.51 + 2.45)
Location | 1,064,878 – 1,064,977 |
---|---|
Length | 99 |
Sequences | 3 |
Columns | 108 |
Reading direction | reverse |
Mean pairwise identity | 81.93 |
Mean single sequence MFE | -31.63 |
Consensus MFE | -22.28 |
Energy contribution | -23.74 |
Covariance contribution | 1.45 |
Combinations/Pair | 1.14 |
Mean z-score | -3.90 |
Structure conservation index | 0.70 |
SVM decision value | 2.65 |
SVM RNA-class probability | 0.996096 |
Prediction | RNA |
Download alignment: ClustalW | MAF
>X_DroMel_CAF1 1064878 99 - 22224390 A----UUGGUGUACAUACAAAUAUUACCAUGAAAAAAUUGAGAGAAUCCUCCUAUUAGAGGACUCAUUUGAAUGU-----AAUGGUAAUGGUAGUGAACACAUUGUAU .----...((((.(((.....(((((((((......(((.(((((.(((((......))))).)).))).)))..-----.)))))))))...))).))))....... ( -26.00) >DroSec_CAF1 15917 105 - 1 AUGCAUUGGUGUGCAUACAUAUAUUGCCAUCGAAAAAUCGAGUGAAUCCUGAUUUUAGAGGACUCAUUCGAAUGUUGCAUGAUGGUAA---UAGGGAACACAUUGUAU (((((...((((.....(...(((((((((((.((..((((((((.((((........)))).))))))))...))...)))))))))---)).)..))))..))))) ( -35.40) >DroSim_CAF1 14816 105 - 1 AUGCAUUGGUGUGCAUACAUAUAUUGCCAUCGGAAAAUCGAGUGAAGAUUCCUUUUAGAGGACUCAUUCGAAUGUUGCAUGAUGGUAA---UAGGGAACACAUUGUAU (((((...((((.....(...(((((((((((..((.((((((((....(((((...))))).))))))))...))...)))))))))---)).)..))))..))))) ( -33.50) >consensus AUGCAUUGGUGUGCAUACAUAUAUUGCCAUCGAAAAAUCGAGUGAAUCCUCCUUUUAGAGGACUCAUUCGAAUGUUGCAUGAUGGUAA___UAGGGAACACAUUGUAU .......((((((..........(((((((((.....((((((((.(((((......))))).))))))))........)))))))))..........)))))).... (-22.28 = -23.74 + 1.45)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 09:42:16 2006