Sequence ID | X_DroMel_CAF1 |
---|---|
Location | 9,237,751 – 9,237,849 |
Length | 98 |
Max. P | 0.515710 |
Location | 9,237,751 – 9,237,849 |
---|---|
Length | 98 |
Sequences | 5 |
Columns | 99 |
Reading direction | reverse |
Mean pairwise identity | 72.77 |
Mean single sequence MFE | -27.90 |
Consensus MFE | -8.72 |
Energy contribution | -9.36 |
Covariance contribution | 0.64 |
Combinations/Pair | 1.26 |
Mean z-score | -1.67 |
Structure conservation index | 0.31 |
SVM decision value | -0.04 |
SVM RNA-class probability | 0.515710 |
Prediction | RNA |
Download alignment: ClustalW | MAF
>X_DroMel_CAF1 9237751 98 - 22224390 GAGGGCGGUGGGGGGUGGGUGAGGCACAAAACGCCGGCGAAAU-UGUUUGGCAUCGUUUGGCCUAAUGCUAAUUUCGCGCCGCCUGCCACCAUAAACAA ......(((((.((((((....(((.......))).(((((((-(((..(((........)))....)).)))))))).)))))).)))))........ ( -42.30) >DroPse_CAF1 22677 77 - 1 ---------------------GGACGCAAAAAGCUGGCGAAAU-UGUUUGCCAUCCUUUGGCCUAAUGCUAAUUUCGCGCCGUCAGCCACCAUAAACAA ---------------------.(((((.....))..(((((((-(((..((((.....)))).....)).))))))))...)))............... ( -19.60) >DroEre_CAF1 23287 98 - 1 GGGGGCGGUGGCGAGGGGGUGCGGCACAAAACGCCGGCGAAAU-UGUUUGGCAUCGUUUGGCCUAAUGCUAAUUUCGCGCCGCCUGCCACCAUAAACAA ......((((((.(((.(((.((((.......))))(((((((-(((..(((........)))....)).))))))))))).)))))))))........ ( -44.30) >DroWil_CAF1 20702 81 - 1 -----------------AAUUGGGGAAAAAGCAGCAACAAAAUGUGUUUGAAGUCGU-UGGCCUAAUGCUAAUUUCGCGCCGUCUGCUGGCAUAAACAA -----------------.((((((..((..((..(((((.....)).)))..))..)-)..))))))((.......))((((.....))))........ ( -13.70) >DroPer_CAF1 23565 77 - 1 ---------------------GGACGCAAAAAGCUGGCGAAAU-UGUUUGCCAUCCUUUGGCCUAAUGCUAAUUUCGCGCCGUCAGCCACCAUAAACAA ---------------------.(((((.....))..(((((((-(((..((((.....)))).....)).))))))))...)))............... ( -19.60) >consensus ___________________U_GGGCACAAAACGCCGGCGAAAU_UGUUUGCCAUCGUUUGGCCUAAUGCUAAUUUCGCGCCGUCUGCCACCAUAAACAA ......................(((...(((((.((.((((.....)))).)).)))))(((.....((.......))))))))............... ( -8.72 = -9.36 + 0.64)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 10:59:45 2006