Sequence ID | X_DroMel_CAF1 |
---|---|
Location | 9,235,804 – 9,235,899 |
Length | 95 |
Max. P | 0.856281 |
Location | 9,235,804 – 9,235,899 |
---|---|
Length | 95 |
Sequences | 4 |
Columns | 100 |
Reading direction | forward |
Mean pairwise identity | 88.53 |
Mean single sequence MFE | -22.88 |
Consensus MFE | -17.00 |
Energy contribution | -17.62 |
Covariance contribution | 0.62 |
Combinations/Pair | 1.10 |
Mean z-score | -2.18 |
Structure conservation index | 0.74 |
SVM decision value | 0.81 |
SVM RNA-class probability | 0.856281 |
Prediction | RNA |
Download alignment: ClustalW | MAF
>X_DroMel_CAF1 9235804 95 + 22224390 AUAAUAAAGGGG---AGAAGAAGAUCCCAAAGGAGGCGGAAAAGUGGGCGGGAAAUGUCGGGUGAAAGA--UAUGUACGUGACAUUGCAGCCAAUCCGGG .........(((---(........))))........((((......(((....(((((((.(((.....--....))).)))))))...)))..)))).. ( -25.60) >DroSec_CAF1 18618 94 + 1 AUAAUAAAGGGG---AGAAGAAGAUCCCA-AGGAGGCGGAAAAGUGGGCGGAAAAUGUCGGGUGAAAGA--UAUGUACGUGACAUUGCAGCCAAUCCGGG .........(((---(........)))).-......((((......(((....(((((((.(((.....--....))).)))))))...)))..)))).. ( -25.60) >DroEre_CAF1 21388 97 + 1 AUAAUAAAUGGG--GAGUAGAGGAUCCCA-CGGAGGCGGAAAAGUGGGCGGGAAAAGUCGGGCAAAAUAUAUAUGUACGUGACAUAGCAGCCAAUCCGGG ..........((--((........)))).-(((((((.........(((.......)))............(((((.....)))))...)))..)))).. ( -21.10) >DroYak_CAF1 19605 97 + 1 AUAAUAAAGGGGAGAAGAAGAAAAGCUCA-CGAAGGCGGAAAAGUGGGCGGGAAAAGUCGGGUGAACGA--UAUGUACGUGACAUUGCAGCCAAUCCGGG ..........(((...........(((((-(............)))))).((.((.((((.(((.....--....))).)))).))....))..)))... ( -19.20) >consensus AUAAUAAAGGGG___AGAAGAAGAUCCCA_AGGAGGCGGAAAAGUGGGCGGGAAAAGUCGGGUGAAAGA__UAUGUACGUGACAUUGCAGCCAAUCCGGG .........(((.............)))........((((......(((....(((((((.(((...........))).)))))))...)))..)))).. (-17.00 = -17.62 + 0.62)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 10:59:43 2006