Locus 3445

Sequence ID	X_DroMel_CAF1
Location	9,233,171 – 9,233,263
Length	92
Max. P	0.971402

overview

Window 7

Location	9,233,171 – 9,233,263
Length	92
Sequences	5
Columns	93
Reading direction	reverse
Mean pairwise identity	90.91
Mean single sequence MFE	-28.60
Consensus MFE	-22.74
Energy contribution	-23.42
Covariance contribution	0.68
Combinations/Pair	1.07
Mean z-score	-2.29
Structure conservation index	0.80
SVM decision value	1.67
SVM RNA-class probability	0.971402
Prediction	RNA

Download alignment: ClustalW | MAF

>X_DroMel_CAF1 9233171 92 - 22224390
UUUUC-CAUUUUCCGGCUGAAUGUUGCGGCUCUUUGGAGUUUUCAUUUCCGGUUGCCAUAUCGCGGCAUAUUAGCUAAAGGGAAGAGUUUGUA
(((((-(.((((..((((((((((((((((...((((((.......))))))..))).....))))))).))))))))))))))))....... ( -28.20)
>DroSec_CAF1 15982 92 - 1
UUUUC-CAUUUUCCGGCUGAAUGUUGCGGCUCUUUGGAGUUUUCAUUUCCGCUUGCCACACCGCGGCAUAUUAGCUAAAGGGGAAAGUUUGUA
(((((-(.((((..(((((((((((((((......((((.......))))(....)....))))))))).)))))))))).))))))...... ( -26.80)
>DroSim_CAF1 26915 92 - 1
UUUUC-CAUUUUCCGGCUGAAUGUUGCGGCUCUUUGGAGUUUUCAUUUCCGGUUGCCAUAUCGCGGCAUAUUAGCUAAAGGGGAAAGUUCGUA
(((((-(.((((..((((((((((((((((...((((((.......))))))..))).....))))))).)))))))))).))))))...... ( -28.20)
>DroEre_CAF1 18738 92 - 1
UUUUC-CAUUUUCCGGCUGAAUGUUGCGGCUCUUUGGAGUUUUCAUUUCCGGUUGCCUAGCCGGGGCAUAUUAGCUAAAGUGGAAAGUUUGGA
(((((-((((((..(((((((((((.(((((..((((((.......))))))......))))).))))).)))))))))))))))))...... ( -34.10)
>DroYak_CAF1 16525 93 - 1
UUUUCCCAUUUUCCGGGUGAAUGUUGCGGCUCUUUGGAGUUUUCCUUUCCGGUUGCCUCAUCUCGGCAUAUUAGCUAAAGCGGAAAAUGCGCA
......((((((((((((((.......(((...((((((.......))))))..))))))))..(((......)))....))))))))).... ( -25.71)
>consensus
UUUUC_CAUUUUCCGGCUGAAUGUUGCGGCUCUUUGGAGUUUUCAUUUCCGGUUGCCACAUCGCGGCAUAUUAGCUAAAGGGGAAAGUUUGUA
.......(((((((((((((((((((((((...((((((.......))))))..))).....))))))).)))))).....)))))))..... (-22.74 = -23.42 +   0.68)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 10:59:42 2006