Sequence ID | X_DroMel_CAF1 |
---|---|
Location | 9,224,768 – 9,224,872 |
Length | 104 |
Max. P | 0.922273 |
Location | 9,224,768 – 9,224,872 |
---|---|
Length | 104 |
Sequences | 5 |
Columns | 107 |
Reading direction | forward |
Mean pairwise identity | 83.21 |
Mean single sequence MFE | -35.82 |
Consensus MFE | -22.92 |
Energy contribution | -22.60 |
Covariance contribution | -0.32 |
Combinations/Pair | 1.10 |
Mean z-score | -2.52 |
Structure conservation index | 0.64 |
SVM decision value | 1.15 |
SVM RNA-class probability | 0.922273 |
Prediction | RNA |
Download alignment: ClustalW | MAF
>X_DroMel_CAF1 9224768 104 + 22224390 GUUGACUUGCGACCGCAACGUCGGCGAAACGGAAGCGAAAAUAAUCGGGCGGAAGUGGGCGAAAGUGGGCGAA-AGUUGG--CGAAAGUGGGCGCGGUGGGUGGGCU (((.((((...(((((..((((.((....((....)).......(((.((....))...)))..)).))))..-.(((.(--(....)).)))))))))))).))). ( -35.50) >DroSec_CAF1 7585 106 + 1 GUUGACUUGCGACCGCAGCGCCGGCGAAACGGAAGCGAAAAUAAUCGGCCGGAAGUGGGCGAAAGUUGGCGAA-AGUGGAAGAGAAAGUGGGCGCGGUGGCUGGGCU .....((.((.(((((.((.(((((....(....)(((......))))))))..((.(((....))).))...-.................))))))).)).))... ( -37.50) >DroSim_CAF1 18995 106 + 1 GUUGACUUGCGACCGCAACGCCGGCGAAACGGAAGCGAAAAUAAUCGGGCGGAAGUGGGCGAAAGUUGGCGAA-AGUGGGAGAGAAAGUGGGCGCGGUGACUGCGCU ....((((.(..((((..((((.......(....)(((......)))))))...((.(((....))).))...-.))))..)...)))).((((((....).))))) ( -37.50) >DroEre_CAF1 10365 95 + 1 GUUGACUUGCGACCGCAACGCCGGCGAAACGGAAGCGAAAAUAAUCGGGCGGAAGUGGGCGAAAGUUGGCGAAGAGUUGG------------UGGGAGAGUGGGCGU (((.((((....((((..((((.......(....)(((......)))))))...((.(((....))).)).........)------------)))..)))).))).. ( -30.60) >DroYak_CAF1 7914 94 + 1 GUUGACUUGCGACCGCAACGCCGGCGAAACGGAAGUGAAAAUAAUCGGCCGGAAGUGGGCGUAAGUUGGCAAA-AGUGGG------------CGUGGUGGGUCGUCU ((..(((((((.((((....(((((...((....))((......)).)))))..)))).)))))))..))...-...(((------------((........))))) ( -38.00) >consensus GUUGACUUGCGACCGCAACGCCGGCGAAACGGAAGCGAAAAUAAUCGGGCGGAAGUGGGCGAAAGUUGGCGAA_AGUGGG___GAAAGUGGGCGCGGUGGCUGGGCU ((..((((.((.((((....(((.(....(....)(((......)))).)))..)))).)).))))..))..................................... (-22.92 = -22.60 + -0.32)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 10:59:37 2006