Locus 3441

Sequence ID X_DroMel_CAF1
Location 9,220,382 – 9,220,494
Length 112
Max. P 0.683652
window5640

overview

Window 0

Location 9,220,382 – 9,220,494
Length 112
Sequences 6
Columns 120
Reading direction forward
Mean pairwise identity 78.72
Mean single sequence MFE -39.88
Consensus MFE -28.08
Energy contribution -28.08
Covariance contribution 0.00
Combinations/Pair 1.25
Mean z-score -1.25
Structure conservation index 0.70
SVM decision value 0.31
SVM RNA-class probability 0.683652
Prediction RNA

Download alignment: ClustalW | MAF

>X_DroMel_CAF1 9220382 112 + 22224390
UUGUCGGCGCAGUCGUGGUAGCCAUCGCAAUGAAAGUUGUACGGUAUGCACAGUGCGUUCGUGCAACGGAACUGGGCGUGGUGGCAUGGCGGGAAGUCUAAAGUAAA--------CAUGG
.....(((....((((.((.((((((((.......(((((((((.((((.....)))))))))))))(........))))))))))).))))...))).........--------..... ( -37.10)
>DroVir_CAF1 2559 112 + 1
UCAUCGGCGCAAUCGUGAUAGCCGUCGCAGUGGAAGUUGUACGGAAUGCACAGCGCAUUCGUGCAGCGGAACUGCGCAUGGUGGCAGGGUGGGAAGUCUGCAG-----GCA---GCGAGG
.......(((.(((.((...(((((((((((....((((((((.(((((.....)))))))))))))...)))))).)))))..)).))).....(((....)-----)).---)))... ( -45.60)
>DroGri_CAF1 2755 116 + 1
UCAUCGGCGCAGUCGUGGUAGCCGUCGCAGUGGAAAUUGUAUGGAAUGCACAGCGCAUUCGUGCAGCGGAACUGCGCAUGAUGGCAGGGCGGGAAGUCUACAGUGAA-GCG---GCAAGU
.....(.(((..(((..((.(((((((((((....)))))...((((((.....))))))((((((.....))))))..)))))).((((.....))))))..))).-)))---.).... ( -43.50)
>DroWil_CAF1 2585 112 + 1
UCAUCGGCACAGUCGUGAUAGCCAUCGCAGUGAAAGUUAUACGGUAUGCACAGAGCAUUCGUACAACGGAACUGGGCAUGAUGGCAAGGCGGAAAGUCUGAAUUAUG--------CAAAG
(((.((((...)))))))..(((((((((((....(((.(((((.((((.....))))))))).)))...))))....))))))).((((.....))))........--------..... ( -32.40)
>DroMoj_CAF1 2774 120 + 1
UCGUCGGCGCAGUCGUUGUAGCCGUCGCAGUGGAAGUUGUACGGGAUGCACAGCGCGUUCGUGCAGCGGAAUUGCGCAUGGUGGCAAGGGGGGAAGUCUGCAAAGGAGGCAAUUGUGAAG
.......(((((((.((((.(((((((((((....(((((((((.((((.....)))))))))))))...)))))).))))).)))).)......((((.(...).)))).))))))... ( -44.40)
>DroAna_CAF1 2567 112 + 1
UUGUCCGCACAGUCGUGAUAGCCGUCGCAAUGGAAGUUGUACGGAAUGCACAGGGCAUUCGAGCACCGGAACUGGGCAUGAUGGCACUGCGGGAAGUCUGUUGGAGA--------CAAAA
...((((((..(((((.((...(((.(((((....))))))))((((((.....))))))..((.(((....))))))).)))))..))))))..((((.....)))--------).... ( -36.30)
>consensus
UCAUCGGCGCAGUCGUGAUAGCCGUCGCAGUGGAAGUUGUACGGAAUGCACAGCGCAUUCGUGCAGCGGAACUGCGCAUGAUGGCAAGGCGGGAAGUCUGCAGUAAA________CAAAG
.....(((....((((..(.(((((((((((....(((((((((.((((.....)))))))))))))...))))....))))))))..))))...)))...................... (-28.08 = -28.08 +   0.00)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 10:59:36 2006